Query= MSMg01no455_n03.b1 MSMg01no455_n03.b1 CHROMAT_FILE:
MSMg01no455_n03.b1 PHD_FILE: MSMg01no455_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:26 2005
(676 letters)
>mm_chr12_108122824_108123898
Length = 1075
Score = 907 bits (469), Expect = 0.0
Identities = 634/730 (86%), Gaps = 68/730 (9%)
Strand = Plus / Minus
Query: 5 gaattcctggggcctgttggccagactggcttactcggtgagttctaaatcaatgagaaa 64
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 867 gaattcctggggcctgttggccagtttggcttacttggtgagttctaaatcaatgagaaa 808
Query: 65 ccatgtcccaatcaatcaatcaatcaatcaatcaatcaatcaatttatttttaaaaggtg 124
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ccatgtc--------tcaatcaatcaatcaatcaatcaatcaatttatttttaaaaggtg 756
Query: 125 ggcagcacctggggaatgacagataaggttgtcctctaaaactcacatatgcatg----- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ggcagcacctggggaatgacagataaggttgtcctctaaaactcacatatgcatgcacat 696
Query: 180 ---------cacacacacacacacacacacacacacacacaccactaataagttactact 230
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 695 acacacacacacacacacacacacacacacacacacacacaccactaataagttactatt 636
Query: 231 tgacaaggtatctgtgggtctgcagcctgtgaagtggacttttcacctctggcttagtgg 290
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct: 635 tgacaaggtatctgtgggtcagcagcctgtgaagtgggcttttcacctctagcttagtgg 576
Query: 291 ggctcccgaggctataagggactcactggatttcatgtctgcttttgggattcactcaag 350
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 575 ggctcccgaggctataagggactcactggatttcatgtctgcttttggaattcactcgcg 516
Query: 351 tggtaacaggggggtttgagctattatttggggcttcaggttttttccatgtactacatg 410
|| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 515 tgataacaggggggtttgagctattatttagggattcaagttttttccatgtactacatg 456
Query: 411 ggacaagcttaagcttggaaaaaaccatattaattaaatttcca-------------ccc 457
|| ||| |||||||||||| ||||| |||||||||||||||||| |||
Sbjct: 455 gggcaaacttaagcttggacaaaac-atattaattaaatttccagtttaattatccaccc 397
Query: 458 atatttttatttgatgtg------------------------------ccccagaaccag 487
|||||||||||||||||| ||||||||||||
Sbjct: 396 atatttttatttgatgtgtctgtcttttatgacacggcaaagatagtgccccagaaccag 337
Query: 488 cttcccaggactgtgaaagaacatcaagactctcacaactgagtctcaaaaggcttc-gg 546
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||
Sbjct: 336 cttcccaggactgtgaaagaacattaagactctcacaactgagtttcaaaaggct-ctgg 278
Query: 547 acttgtatttccctcatcccatgcagtctggagtcaatggagaaataaattcatgcaaag 606
||||||||| |||||||||| |||||||||| | ||||||||||||||||| ||||||||
Sbjct: 277 acttgtattcccctcatcccgtgcagtctggggccaatggagaaataaatttatgcaaag 218
Query: 607 cagcaaataccacaaatgggaattcatcanggctaccttgggccttgttcaccatactct 666
|||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 217 cagcaaataccatgaatgagaattcatcagggctaccttgggccttgttcaccatactct 158
Query: 667 ttgactgaca 676
||||||||||
Sbjct: 157 ttgactgaca 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space: 709290
Effective search space used: 709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_n03.g1 MSMg01no455_n03.g1 CHROMAT_FILE:
MSMg01no455_n03.g1 PHD_FILE: MSMg01no455_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:26 2005
(245 letters)
>mm_chr12_107926895_107927539
Length = 645
Score = 379 bits (196), Expect = e-110
Identities = 231/246 (93%), Gaps = 11/246 (4%)
Strand = Plus / Plus
Query: 1 aaggcctgcag-tccgctgtgtattcctggcaggatggctacttaggaaaatcctacctg 59
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcctgcaggtg-gctgtgtattcctggcaggatggctacttaggaaaatcctacctg 259
Query: 60 tgtccattgctcgggttgcaggcacccctggctctcgtgtgtgattttgcaacatgcctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtccattgctcgggttgcaggcacccctggctctcgtgtgtgattttgcaacatgcctg 319
Query: 120 gattttgctggtctgtagtaacagaaagaaagaaagagagaaagaaagaaagaaagagag 179
||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||
Sbjct: 320 gattttgctggtctgtagtaacagaaagaaagagagagagagagagaga------gagag 373
Query: 180 agagagagagagagagagagagagagagagagagagagagagagagagagaggaaggaag 239
||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct: 374 agagagagagagagagagagagagagagagagaga-agagagaga-agag-ggaaggaag 430
Query: 240 gaagga 245
||||||
Sbjct: 431 gaagga 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
