BAC Information

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BAC

Clone NameMSMg01-456E23
Chromosome12 (Build37)
Map Location 64,505,999 - 64,506,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E23.T7 (MSMg01no456_e23.b1)MSMg01-456E23.TJ (MSMg01no456_e23.g1)
ACCAG542643AG542644
length736748
length of high quality
(start - end)
499 (69 - 567)504 (80 - 583)
definitionCHROMAT_FILE: MSMg01no456_e23.b1 PHD_FILE: MSMg01no456_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005CHROMAT_FILE: MSMg01no456_e23.g1 PHD_FILE: MSMg01no456_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGATGTCAGAATCCCGAGAATCAAATACCCCAATTAAATAT
GGGGTACAGAGCTAAACAGAGGAATATTGAATGGTTGAGAAGCACCCAAA
GAAATGTTCAACATCCATAGTCATCAGGGAAATACAAATCAAAACGACCC
TCATAATTAACCTCATACCTTTCAGAATGGCTAAAATCAAAAACTCACAA
ATGCTGATCAGCAGATGCTGACAAGGATATGGAGAAAGAGCAACATTTCT
CCATTTTGAGTGGGATTGCAAGCTTATACAACCACTCTAGAAACCAGTTT
TATGGTTCCTCAGAAAACTGGACACTTGAGGACCTAGCTATACCACTCCT
GGGCATATACACAGAAGATCCTCCAACATGTAATAAGGACACATCCTCCA
CTATGTTCATAGTAGCCTTATTTATAATAGCCAGGACATGGAAAGAACCC
ACTTGCCCTTCAACAGAGGAATGGATACAGAANATTTGGTACATTTAAAC
AATGGATTATTACTCAGCTATTAAAAATGATGAATTCATGAAATTCTTAG
GAAAAATGGATGAAACTAGAAAATGTCATCATGAGTGGAATAACCCAGTC
ACAAAAATACACCCATAGTATGCACTCACTGGATAAATGGAATTTAGCCT
AAAAGCTCAAATAACAAGAAAACATTCCCAGATAAA
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGATGGTTGCGAATTGACC
TGTATGAGTGTAATAAGCCAAATATGAGTTTTCTGGAAGACTAGCAAGTG
CTCTTAACTGCTGTGCCATCTCTCCAGGTCCCACAGTGCATATTTACAAT
TGTGATTGCACAGTTATTCCTGGACTAGTTATTGTTAAACTTCTGAGACT
TACTTTCAGGCTCCCATGCATCCAGTTTCTTTAAAAAACAAACACACACA
CACACACACACACACACACACACACTCACAAACAATAAAACACAGCACTT
TCTGTATATGAAAAATTAATTCCAGAAAATAGAACTCTTTTATAGAGACT
TAAAGTTACATATTTATGAAAATGTAGTTGAAAAGCACTACTGAAACCAT
GTTTCTTCTGAAAAAACAAAACAAAACAAAACAAAACAAAACAAAGCAAA
CAAAAAACCCAATGTATTTCATTGATTTGGAGATAATCTACTCTTTGTAT
CACAAAACTTTCAGAAACTCTTACGTTTTGGTAGTAGTTTTAATTATGCT
CTAAACTTAAAATGTAAATTTGATGTTTTTTGTGGCATCCTGTGGACCCT
TAAAAGGATTTAAAAACCCAAATATCAGTGTCAATTTCCAGGAAATTTAT
GTCTACTACTTTAAACTATTGTAAAACTTGTTTCTGCTCATGTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e23.g1 MSMg01no456_e23.g1 CHROMAT_FILE:
MSMg01no456_e23.g1 PHD_FILE: MSMg01no456_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:05 2005
         (504 letters)



>mm_chr12_64505670_64506573
          Length = 904

 Score =  911 bits (471), Expect = 0.0
 Identities = 500/517 (96%), Gaps = 13/517 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatggttgcgaattgacctgtatgagtgtaataagccaaatatgagttttctggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 actgatggttgcgaattgacctgtatgagtgtaataagccaaatatgagttttctggaag 787

                                                                       
Query: 61  actagcaagtgctcttaactgctgtgccatctctccaggtcccacagtgcatatttacaa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 786 actagcaagtgctcttaactgctgtgccgtctctccaggtcccacagtgcatatttacaa 727

                                                                       
Query: 121 ttgtgattgcacagttattcctggactagttattgttaaacttctgagacttactttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttgtgattgcacagttattcctggactagttattgttaaacttctgagacttactttcag 667

                                                                       
Query: 181 gctcccatgcatccagtttctttaaaaaacaaacacacacacacacacacacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gctcccatgcatccagtttctttaaaaaacaaacacacacacacacacacacacacacac 607

                                                                       
Query: 241 acacactcaca--------aacaataaaacacagcactttctgtatatgaaaaattaatt 292
           |||||| ||||        |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acacacacacacacacacaaacaataaaacacagcactttctgtatatgaaaaattaatt 547

                                                                       
Query: 293 ccagaaaatagaactcttttatagagacttaaagttacatatttatgaaaatgtagttga 352
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 546 ccagaaaatagaactcttttatagagacctaaagttacatatttatgaaaatgtagttga 487

                                                                       
Query: 353 aaagcactactgaaaccatgtttcttctgaaaaaacaaaacaaaacaaaacaaaacaaaa 412
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 486 aaagcactactgaaaccatgtttcttatgaaaaaacaaaacaaaacaaaacaaaacaaaa 427

                                                                       
Query: 413 caaa-----gcaaacaaaaaacccaatgtatttcattgatttggagataatctactcttt 467
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caaaacaaagcaaacaaaaaacccaatgtatttcattgatttggagataatctactcttt 367

                                                
Query: 468 gtatcacaaaactttcagaaactcttacgttttggta 504
           |||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtatcacaaaactttcagaaactcttacgttttggta 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)