BAC Information

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BAC

Clone NameMSMg01-456H10
Chromosome12 (Build37)
Map Location 113,068,185 - 113,236,237
singlet/doubletdoublet
Overlap genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9
Upstream geneRage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H10.T7 (MSMg01no456_h10.b1)MSMg01-456H10.TJ (MSMg01no456_h10.g1)
ACCAG542760AG542761
length737821
length of high quality
(start - end)
540 (47 - 586)136 (72 - 207)
definitionCHROMAT_FILE: MSMg01no456_h10.b1 PHD_FILE: MSMg01no456_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:17 2005CHROMAT_FILE: MSMg01no456_h10.g1 PHD_FILE: MSMg01no456_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,235,702 - 113,236,237)(113,068,185 - 113,068,320)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATTTGTCAGAAACCAAAGTCCACTCACTATAAAAGAAGCAATG
TGTCCCAACATACCCCACTATGATAAATGTGCCCCAAGTCATTAAGGTAA
TACTCTTCAATAGCGTGGGGCTTGCCTTCCACTTCAAAAACATATGCCGG
GTTCATCTTGTTCTGAACGGGAACAGCAAAGTAGTCTGCAAACTGCTTGC
AGTTGATGGTGGCAGACATGAGGACCACCTGCAGGGAAGAGAGCCCAGCG
GTGAGCAGGGCAGGCAGGGCGGGTGGATCGAGCGAGGCTGGCCACCTCAG
AGCCCAGGCCCACCTGCCACATCCTCCCACCATGTACAACCCACTGAAGC
CTTCTAGTTTACTTTATTTTATTTATTATTTTGTTATATTCTGACCAGAC
TTTCCTGTCTCTCCTCTTCTCACAGTCCCTCTCCCACAATTCCCCTCCCC
CTCCCCATCCATTCCTCCTCTATTGCTCTTCAGTAAGAGCAGGCCTCCAA
TGAATTATAAATAGACTATCTTGATTCTTTTCTTGGGTATTATCTAAATT
AAAACAGTATAAAGAAGGCCCGGGCCTTCCTCCCAGTCAGGAATTTGGAG
GAAGGAACCTTGAACCTAAAAATTCAAAATAATGGAACTGGTCTCATTCT
GGGTTCTTTATTGGTTGGGAAAAAAACCTACCTTCCA
TCATTATAGTGGGAGGCCTGGGGGCCGCCTGTTCTCAACAGTAGGTGACC
TATAGATTTTCTGCGAAATTCCAGATCTGGGAACTATGTGGGGTGGCTTA
ATACTTGCCAAAGTTCACCATGAGCCCTGATGGTCTCTAAACCTCCACGT
GTTTTTCAGTATGTGGCAAAGCCACACAGCTCTAGGGACTTGGGAGCTTG
CCCATGTACTAGCAGGCTGCTGGTGCTTGGAGACAGTGTTCTTGTCTACC
TAGATGCCAGCAGAACGGAACCCCATGCTGTGATTGCCTGTGCCTTTTGA
ACGAGTCATTTTATTTCCAGACTTCCAGCGTCTAATCCCAGTGTGAGTGC
TTACCCCCAGCAAGCTTTTGGTCTCGTATTCCTCCCGGATCCCAATATTA
GTTCACCTTCACTCGGTCTTCTTTTTTATCCACCGCTTCCTCTTATGTTG
ATGCCTTTTCCCTTTTGCAACGTCTTTTTCATTTTTTTTTCTTGGTTTTC
TCACGCCCCCTTTTCGCTTATTCGTCTGTCCTTTTTACTTCACCTATCAT
ATTTCTTTTCGCACCCCCTCGCTTTTCCCCCATGCCCTTTTCCCCCTTTT
CTTTTCTTCTTCCTCTCTACTGCCACATATTTCTTCCTTTCCTCATCTTT
CTCCCCCCCCACCTTTCCTTTTTTTTTATTTTCACCCTCCCTTTCTTTCC
TACCCCTTTTTTTCTATTTCCACTTTTACTCTCTTACTTTTCTTTCCTTT
CCTCCTCCACTATATCTATACATGCCCTCTTTTTCTTTCTTCCTTCATTC
CACATATAGCCTTATCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h10.b1 MSMg01no456_h10.b1 CHROMAT_FILE:
MSMg01no456_h10.b1 PHD_FILE: MSMg01no456_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:17 2005
         (540 letters)



>mm_chr12_113235672_113236611
          Length = 940

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatttgtcagaaaccaaagtccactcactataaaagaagcaatgtgtcccaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaattcaatttgtcagaaaccaaagtccactcactataaaagaagcaatgtgtcccaac 507

                                                                       
Query: 64  ataccccactatgataaatgtgccccaagtcattaaggtaatactcttcaatagcgtggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ataccccactatgataaatgtgccccaagtcattaaggtaatactcttcaatagcgtggg 447

                                                                       
Query: 124 gcttgccttccacttcaaaaacatatgccgggttcatcttgttctgaacgggaacagcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcttgccttccacttcaaaaacatatgccgggttcatcttgttctgaacgggaacagcaa 387

                                                                       
Query: 184 agtagtctgcaaactgcttgcagttgatggtggcagacatgaggaccacctgcagggaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtagtctgcaaactgcttgcagttgatggtggcagacatgaggaccacctgcagggaag 327

                                                                       
Query: 244 agagcccagcggtgagcagggcaggcagggcgggtggatcgagcgaggctggccacctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agagcccagcggtgagcagggcaggcagggcgggtggatcgagcgaggctggccacctca 267

                                                                       
Query: 304 gagcccaggcccacctgccacatcctcccaccatgtacaacccactgaagccttctagtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagcccaggcccacctgccacatcctcccaccatgtacaacccactgaagccttctagtt 207

                                                                       
Query: 364 tactttattttatttattattttgttatattctgaccagactttcctgtctctcctcttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tactttattttatttattattttgttatattctgaccagactttcctgtctctcctcttc 147

                                                                       
Query: 424 tcacagtccctctcccacaattcccctccccctccccatccattcctcctctattgctct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tcacagtccctctcccacaattcccctccccctccccatccattcctcctctattgctct 87

                                                                   
Query: 484 tcagtaagagcaggcctccaatgaattataaatagactatcttgattcttttcttg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  tcagtaagagcaggcctccaatgaattataaatagactatcttgattcttttcttg 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no456_h10.g1 MSMg01no456_h10.g1 CHROMAT_FILE:
MSMg01no456_h10.g1 PHD_FILE: MSMg01no456_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:17 2005
         (136 letters)



>mm_chr12_113067985_113068520
          Length = 536

 Score =  263 bits (136), Expect = 3e-75
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatctgggaactatgtggggtggcttaatacttgccaaagttcaccatgagccctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatctgggaactatgtggggtggcttaatacttgccaaagttcaccatgagccctgat 260

                                                                       
Query: 61  ggtctctaaacctccacgtgtttttcagtatgtggcaaagccacacagctctagggactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctctaaacctccacgtgtttttcagtatgtggcaaagccacacagctctagggactt 320

                           
Query: 121 gggagcttgcccatgt 136
           ||||||||||||||||
Sbjct: 321 gggagcttgcccatgt 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)