Query= MSMg01no456_l06.b1 MSMg01no456_l06.b1 CHROMAT_FILE:
MSMg01no456_l06.b1 PHD_FILE: MSMg01no456_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:37 2005
(376 letters)
>mm_chr12_16073726_16074501
Length = 776
Score = 632 bits (327), Expect = 0.0
Identities = 361/377 (95%), Gaps = 9/377 (2%)
Strand = Plus / Plus
Query: 1 tttatcccacgagccttcagaccttaagtaccaactcaggtttcttgtctttcctgggtt 60
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcccatgagccttcagatcttaagtaccaactcaggtttcttgtctttcctgggtt 260
Query: 61 gcccatacagtctccttgcatttgaatgctctgtcattgtcctctgtctagagaatattt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccatacagtctccttgcgtttgaatgctctgtcattgtcctctgtctagagaatattt 320
Query: 121 cataactttttattaacatatacaaactttacaaaatagcaggtttcactgtgtgtctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataactttttattaacatatacaaactttacaaaatagcaggtttcactgtgtgt---- 376
Query: 181 gtgtgtgtgcaaacatgtgtgtgcgtgtgtgcaaacatgtgtgtgtgtgtgtctgtgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ----gtgtgcaaacatgtgtgtgcgtgtgtgcaaacatgtgtgtgtgtgtgtctgtgtat 432
Query: 241 ttgtttaatttattttgatttcatccatccattaccctctattgccaaagatcccttctc 300
|||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 433 ttgtttaaggtattttgatttcatccatccattaccatctattgccaaagatctcttctc 492
Query: 301 ctcttccctcactcagtagctgtcatcctaaccaaatgctcaggtcccactgagaggcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctcttccctcactcagtagctgtcatcctaaccaaatgctcaggtcccactgagaggcct 552
Query: 361 tctctcaaaaaa-taag 376
|||||||||||| ||||
Sbjct: 553 tctctcaaaaaaataag 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_l06.g1 MSMg01no456_l06.g1 CHROMAT_FILE:
MSMg01no456_l06.g1 PHD_FILE: MSMg01no456_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:37 2005
(202 letters)
>mm_chr12_16242523_16243124
Length = 602
Score = 385 bits (199), Expect = e-111
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 1 caaaactgagatgcaatacattcagctcagtgaggactgcgaaggaccacttcaggaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaaactgagatgcaatacattcagctcagtgaggactgcgaaggaccacttcaggaatg 302
Query: 61 ccatgctcatggtcagactcaggggtaggatttagcagctgtgatttcaagccaaatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccatgctcatggtcagactcaggggtaggatttagcagctgtgatttcaagccaaatgct 242
Query: 121 gtttgtgtcataatcaaggtgattagctttgagcattactggatggatagatagatagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtttgtgtcataatcaaggtgattagctttgagcattactggatggatagatagatagat 182
Query: 181 agatagatagatagataga 199
|||||||||||||||||||
Sbjct: 181 agatagatagatagataga 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space: 115236
Effective search space used: 115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
