BAC Information

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BAC

Clone NameMSMg01-459C09
Chromosome12 (Build37)
Map Location 54,842,333 - 54,842,571
singlet/doubletsinglet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459C09.T7 (MSMg01no459_c09.b1)MSMg01-459C09.TJ (MSMg01no459_c09.g1)
ACCAG544811AG544812
length777772
length of high quality
(start - end)
94 (61 - 154)239 (76 - 314)
definitionCHROMAT_FILE: MSMg01no459_c09.b1 PHD_FILE: MSMg01no459_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:57 2005CHROMAT_FILE: MSMg01no459_c09.g1 PHD_FILE: MSMg01no459_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTGCGGCCGCTAAACGATCACATCCCGACCGATCCGCGGAATCACA
ATTCTTTAGATATACAAATACAAGTAGTTGGTTTGACTTTGAGGTTTTCA
TCCAGCAGTTTTAGGTTCTTGGTTCAGATGGTTATTTGGGGGGGGGGGAT
CTCTGAGGAAGCGTGCATACCACCCACGGTGTGTAGAATGACCCCAGCGA
CAGGACCGCCATCTCATTTAGGTGTGATTTTACATTATACGGTCCTTCTT
TATCGCACTGTTTCATTCAATCACCCCCCACGGCCACTAAGTCCTCCCCT
NNCCCCTTTTTCCCCCCCGCCCCCCCTACCCCTCTTACCCTCCCATCCCC
CATTACCTCTCCCGTCCCCCTGTCTCTCCACCAACCGACCGCCCTCTTCC
ACCCATGCTTACCCTCTCTCCCCCCCACCCCTCCTCCCCCCCCCTGCTTT
TTCCCCTCCCCCCACCCCTCCTTACACTCTTCCTCCCTTCCCCCCCCTAT
ATTCCCCTACATCCCCTTTATCCTCCTCCCCCTTCTCCCTCTCCCTCACC
CCTCTCCCTCTTTTATCCCCCCCCTTTCCCCCCCCATCCCCTCTATCCCT
CTATACCCCCCCTCCTTCCCCTCCCTCCCCTCCTTTTCCCTACCCATTTT
TATTCCTCCTTTTTCTACCCATCTACCTCCCATCGCCGCTCTCCCTTCCC
CCCATCTTTACTTAATCACTTCATTTTATTTCCCGCCCTCTTTCCCCCCC
CGCCCTCCTCTTCTTCTCTCCTTTTCN
CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCACCTCTGAAGATTTTTCCTATGA
AGTAGGCACAAGGCTAGAATTAAATTTAAATAACTTTCTCTCTCTTTCTT
GGTTATCTCTACCTGATATGGAAGTTGGTTTCCTTGAAAAACTTGACATT
GGAAAATCCTTGGACGTTGATTTCCATACACTTGTGGTTTAAGACCCGCC
CTCTTTTTACAATAATGGACGTTTAAGCAAAAACACTAGCACTAAATGCT
TACTAAACTAAGAACTATGTTAGGCTGTGTTCCCAAAGATGGCCAGACTA
ATATGGTGAGACCAACATACCCGGCAGGCAGATAGGCAGCTATGGCACTG
GCATCAGGTAGGTGGGGACAGATTATAGCTCATTGAAAACTCATATATTT
GAGCTGCTCTGTTTATGCCAAGAGAGAAAGCCATTTCTGTGAAACTCTTT
CTAAACCTCAAAACTTCTAAGAAAATAATCGGTGCTGCTATTTCATGCCA
CCTAAATTTGGGAGCGACATTTTTTAAATGGCGAATAATCTGAACCCCCA
CCATCCTTCCCTTATGCATTTTTATGGAAAACTGGACTCTTGGCAAACCC
ACTCTTACCCAAAACATTGAAACTTATTGTGAAAAAAGACTCACAATTTT
CTTCTAAATATAATACTACCCAAAATCACTACTTGTTTTTTTGACACAAA
ACACCGCTTTATTTCTCCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_c09.g1 MSMg01no459_c09.g1 CHROMAT_FILE:
MSMg01no459_c09.g1 PHD_FILE: MSMg01no459_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:57 2005
         (239 letters)



>mm_chr12_54842133_54842771
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacctctgaagatttttcctatgaagtaggcacaaggctagaattaaatttaaataact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccacctctgaagatttttcctatgaagtaggcacaaggctagaattaaatttaaataact 380

                                                                       
Query: 61  ttctctctctttcttggttatctctacctgatatggaagttggtttccttgaaaaacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctctctctttcttggttatctctacctgatatggaagttggtttccttgaaaaacttg 320

                                                                       
Query: 121 acattggaaaatccttggacgttgatttccatacacttgtggtttaagacccgccctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acattggaaaatccttggacgttgatttccatacacttgtggtttaagacccgccctctt 260

                                                                      
Query: 181 tttacaataatggacgtttaagcaaaaacactagcactaaatgcttactaaactaagaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttacaataatggacgtttaagcaaaaacactagcactaaatgcttactaaactaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)