BAC Information

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BAC

Clone NameMSMg01-459H13
Chromosome12 (Build37)
Map Location 39,247,615 - 39,420,564
singlet/doubletdoublet
Overlap geneDgkb
Upstream geneLOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459H13.T7 (MSMg01no459_h13.b1)MSMg01-459H13.TJ (MSMg01no459_h13.g1)
ACCAG545056AG545057
length768776
length of high quality
(start - end)		536 (67 - 602)415 (72 - 486)
definitionCHROMAT_FILE: MSMg01no459_h13.b1 PHD_FILE: MSMg01no459_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:24 2005CHROMAT_FILE: MSMg01no459_h13.g1 PHD_FILE: MSMg01no459_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,420,029 - 39,420,564)(39,247,615 - 39,248,029)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAATT
CACGTTTTTCTTATTTTTGAAGAACTAAAGTGGTTGTAGTATCAGCCACC
ACTACACACATACATTCTTAAGTGTTGCATGTCTCTCAGTGGACACAGTG
ATAGGGGCCATGATGACCTCTGTATGAAACGTGATTTATGGCTATGCAAA
TCTCTGTTTTACCAGAATGGGTCTGTTAACATGGACTTACAGAAGGTAAG
AGCTTGAAGGAAATATTTATTGAAGTTCAGGGAAGACAGATGCATAGTAT
TCCAAACAATTATTTTATGGCTACTTTGATAAAGGTTAAACAAATGGGTG
ATACTATAATAAAAGAATATATGCTAATTGTGCCATTTGTCATTATATAT
AAAAACACTTCTTTGCTTTTGTGGGTGGAGAGCTGATGTTGTGAAAGTAA
TCAGATGTGACAAAGGTACTATCAACATACCTCAACAACAATTAAAATAA
TCTATTTTATAAATGGACAAAAGACTTAACCGCACACTTCTCTAAAAACT
ATATACAAAAGGAAACAGTCTAACAAACATATGAAGTATGTTCAAAATCT
CCAATAATTAGAAAAACACAAATCAATTTACAGTGAGTTAGTACTGCAGA
TCCATTAACATGGTCATTAAAAAATATGCTGTTTTTTATTGTTAGNATAC
AAAAGTAGCAAGTGTTACCACCGATGTGGAGAAAAAAGAATTCTTAAGTG
GGGGCTATGGGAATAAAN

TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTGAGACCAAAATATAAATTACAGAAAA
ACAACAAAAGAAAAAAATCACAGTGTAACTGTGGTATAACCAAATGAAAT
TTTAAAAAGTGATAATAATGTGTGCTGTTTTTAAAGGTTTCAGAGCTGTG
TTTAAAGCAATATCTACTTGGAAACCGTAATCTTAGACTATACGATTAGC
TCCTAGAAACATAAACTCTGGTAGAAGATGTAAACCTGAAACAGAATGAT
ACCCATTTTCAATATACACTGCCTATGTCCTCAAACTCCATCTTTATCGC
ACTGGTGTTCATCACAAAGCCAACAACACAAATTTTAAGGTATTTTAAAG
TAAAGCCCTCTTTCTGTTTACGTTTCTATTTTAGTTCTTTGTCACTGAAG
TATGCAGTCAACTCAAATTTCATGGTTTTATCCAGGCCGTGTGGTACATG
GTTTTAATCTCAGCACTCANGAGGCAGAGGCAAGGCAGATCTCTAAGTAT
TTACCCCACCTGGTCTACAAAGTGAACCTAAGTCAGCCATGGGAAACCCC
ATCTTGGCAAAAAAAGGGTTGTTTTAAACATAAGTAACACCCTTATTCCC
CCGGGATTCTTTGTATTTAGGGAAAAAAAACCCCCCCCCTCTCCTCCCAA
AAAAAATTTTTTGTCTTTGGTCCCTGGGAAATTTCTTAATCCGAAAACCC
CACCGCGTAAACCTTCTCCTCATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_h13.b1 MSMg01no459_h13.b1 CHROMAT_FILE:
MSMg01no459_h13.b1 PHD_FILE: MSMg01no459_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:24 2005
         (536 letters)



>mm_chr12_39419969_39420904
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 531/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaagaactaaagtggttgtagtatcagccaccactacacacatacattcttaagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttgaagaactaaagtggttgtagtatcagccaccactacacacatacattcttaagtgtt 537

                                                                       
Query: 61  gcatgtctctcagtggacacagtgataggggccatgatgacctctgtatgaaacgtgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcatgtctctcagtggacacagtgataggggccatgatgacctctgtatgaaacgtgatt 477

                                                                       
Query: 121 tatggctatgcaaatctctgttttaccagaatgggtctgttaacatggacttacagaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tatggctatgcaaatctctgttttaccagaatgggtctgttaacatggacttacagaagg 417

                                                                       
Query: 181 taagagcttgaaggaaatatttattgaagttcagggaagacagatgcatagtattccaaa 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 416 taagagcttgaaggaaatatttattgaagttcagggaagagagatgcatagtattccaaa 357

                                                                       
Query: 241 caattattttatggctactttgataaaggttaaacaaatgggtgatactataataaaaga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caattatttcatggctactttgataaaggttaaacaaatgggtgatactataataaaaga 297

                                                                       
Query: 301 atatatgctaattgtgccatttgtcattatatataaaaacacttctttgcttttgtgggt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 296 atatatgctaattgtgccatttgtcattatatataaaaacacttctctgcttttgtgggt 237

                                                                       
Query: 361 ggagagctgatgttgtgaaagtaatcagatgtgacaaaggtactatcaacatacctcaac 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggagagctgatgttgtgaaggtaatcagatgtgacaaaggtactatcaacatacctcaac 177

                                                                       
Query: 421 aacaattaaaataatctattttataaatggacaaaagacttaaccgcacacttctctaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 176 aacaattaaaataatctattttataaatggacaaaagacttaaccacacacttctctaaa 117

                                                                   
Query: 481 aactatatacaaaaggaaacagtctaacaaacatatgaagtatgttcaaaatctcc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aactatatacaaaaggaaacagtctaacaaacatatgaagtatgttcaaaatctcc 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_h13.g1 MSMg01no459_h13.g1 CHROMAT_FILE:
MSMg01no459_h13.g1 PHD_FILE: MSMg01no459_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:24 2005
         (415 letters)



>mm_chr12_39247415_39248229
          Length = 815

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgagaccaaaatataaattacagaaaaacaacaaaagaaaaaaatcacagtgtaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagaccaaaatataaattacagaaaaacaacaaaagaaaaaaatcacagtgtaactg 260

                                                                       
Query: 61  tggtataaccaaatgaaattttaaaaagtgataataatgtgtgctgtttttaaaggtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtataaccaaatgaaattttaaaaagtgataataatgtgtgctgtttttaaaggtttc 320

                                                                       
Query: 121 agagctgtgtttaaagcaatatctacttggaaaccgtaatcttagactatacgattagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agagctgtgtttaaagcaatatctacttggaaaccgtaatcttagactatacgattagcc 380

                                                                       
Query: 181 cctagaaacataaactctggtagaagatgtaaacctgaaacagaatgatacccattttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagaaacataaactctggtagaagatgtaaacctgaaacagaatgatacccattttca 440

                                                                       
Query: 241 atatacactgcctatgtcctcaaactccatctttatcgcactggtgttcatcacaaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatacactgcctatgtcctcaaactccatctttatcgcactggtgttcatcacaaagcc 500

                                                                       
Query: 301 aacaacacaaattttaaggtattttaaagtaaagccctctttctgtttacgtttctattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaacacaaattttaaggtattttaaagtaaagccctctttctgtttacgtttctattt 560

                                                                  
Query: 361 tagttctttgtcactgaagtatgcagtcaactcaaatttcatggttttatccagg 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagttctttgtcactgaagtatgcagtcaactcaaatttcatggttttatccagg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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