BAC Information

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BAC

Clone NameMSMg01-459I03
Chromosome12 (Build37)
Map Location 90,083,199 - 90,083,618
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261
Downstream geneEG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459I03.T7 (MSMg01no459_i03.b1)MSMg01-459I03.TJ (MSMg01no459_i03.g1)
ACCAG545084AG545085
length740863
length of high quality
(start - end)
420 (69 - 488)49 (72 - 120)
definitionCHROMAT_FILE: MSMg01no459_i03.b1 PHD_FILE: MSMg01no459_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:27 2005CHROMAT_FILE: MSMg01no459_i03.g1 PHD_FILE: MSMg01no459_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAGTTATCTCGAAGTACCTTTTAGGAAATATTTACAACAATAA
TAGAAGGAAAGAATTAAAGTGTCTTCTATCTGGACTCTGACAAAGTGCTA
CTCTAGCTGGATCTAGAAACATGCTGGATACCAACATGAATACAGAATAA
ATGACTCCTTCCTCTTTTTCTTTTAAGTACTATTTGTGTCTGTATATCTG
TGATACACAGGCTCCCAGAGCATATACTAGAACAAATGGAAGAAAAGATC
ACCAATCAGTAAGACATGCTTAGTTGAAATTGCCTTGAAACAGACTGCAA
ATCATATGTAAATTATATGCAAAATATACATATGTCTGCCTAAACTATGT
TATACCCTTTGGGAAAACCCCCATGGAGATAGCTGATTTTGCCACTCAGG
AAAAATGGAAATGGCTATGGAAGCTAAGTCATTTATCAGCAGCTGTGACC
ATGATGAAGCCTGTCATGAGAATGATTAATACTGAGACTAACAACTATTT
AGTGAAACAGGCAAGAGAAGGATACTACCATGTTCATGAACCAGTTCAGA
AATTGAAGATCTCCATTATTTAAGCTAATGGCCTCTCTGCCTCTATCTGT
CCCTCTCTGACTGACCCTCTGGCTCTCCCCGGCTGGCCCTCCCTGGCTGT
TTCTGGCCCTTTTCCTCCCCCCTTTTTTTTATAAAAAAAA
AAGACAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCCTTCTCTAAACTTCTTTTCCAGCTTC
AAGATATCCTCTTTTTTGTTTTCGATTGATTTGTTTTGTTTTGTTTTGTT
TCGCCCACCCCACCCCCGCACGCCCCACACCCCCACAACACACAAAACAC
CCCCCACCCCACCCAACAAAAAATACCCCCCCCACCCACCCACACCACCC
AAAACCAAACCCCCACGAAACCACCACACCAACCAACCCAACAGAAACAC
ACAAACACAAACACAAAAAAAAAATTACACCAGCAAAACCAAACACCAAA
CACCAAAACAAACACACCCAACAACAAAAAAACCAAAACCCCAACACCCC
ACACAAAAACAAACACAACCACCACCAACAAAAAAAAACCCCCCAAAAAA
AAACAACAAAAACCCACAAAACACCACAAAAACAACCACCACAACCAAAA
AACACCACAACACCCCACACCCCACAACCAAACACAAACCCAAACAACAC
ACACCAACAACCACCAAAACCAAACCCACACCCCACACAAAAAACCTACC
ACATCACCACCCCACCCACAAAACCAACACCACCCACAAAGCACCCCCGC
ACCCCACAAAAAGACAATGTCCAAATTAATACACAAACACACACCCCCAC
CCCCACACAACCCTACACCACAACCCCAACAAAACAACAAGCAACCAAAA
CAACAACAACAAAAATTTACAACCCGAATATACCAAAAACAACCCCCAAA
AAAATAACATACAAATAATATATAACCCGAAACCACACCAACACCAACCA
CACCCACCACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_i03.b1 MSMg01no459_i03.b1 CHROMAT_FILE:
MSMg01no459_i03.b1 PHD_FILE: MSMg01no459_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:27 2005
         (420 letters)



>mm_chr12_90082999_90083818
          Length = 820

 Score =  766 bits (396), Expect = 0.0
 Identities = 414/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtaccttttaggaaatatttacaacaataatagaaggaaagaattaaagtgtcttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagtaccttttaggaaatatttacaacaataatagaaggaaagaattaaagtgtcttcta 561

                                                                       
Query: 61  tctggactctgacaaagtgctactctagctggatctagaaacatgctggataccaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctggactctgacaaagtgctactctagctggatctagaaacatgctggataccaacatg 501

                                                                       
Query: 121 aatacagaataaatgactccttcctctttttcttttaagtactatttgtgtctgtatatc 180
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 500 aatacagaataaatgactccttcctcttttccttttaagtgctatttgtgtctgtatatc 441

                                                                       
Query: 181 tgtgatacacaggctcccagagcatatactagaacaaatggaagaaaagatcaccaatca 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtgatacacaggctcccatagcatatactagaacaaatggaagaaaagatcaccaatca 381

                                                                       
Query: 241 gtaagacatgcttagttgaaattgccttgaaacagactgcaaatcatatgtaaattatat 300
           ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaaggcatgcaaagttgaaattgccttgaaacagactgcaaatcatatgtaaattatat 321

                                                                       
Query: 301 gcaaaatatacatatgtctgcctaaactatgttataccctttgggaaaacccccatggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcaaaatatacatatgtctgcctaaactatgttataccctttgggaaaacccccatggag 261

                                                                       
Query: 361 atagctgattttgccactcaggaaaaatggaaatggctatggaagctaagtcatttatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atagctgattttgccactcaggaaaaatggaaatggctatggaagctaagtcatttatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)