BAC Information

Click to search

BAC

Clone NameMSMg01-459I24
Chromosome12 (Build37)
Map Location 44,121,738 - 44,122,103
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638533
Downstream geneLOC100039059, ENSMUSG00000066507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459I24.T7 (MSMg01no459_i24.b1)MSMg01-459I24.TJ (MSMg01no459_i24.g1)
ACCAG545126AG545127
length780810
length of high quality
(start - end)
366 (69 - 434)367 (70 - 436)
definitionCHROMAT_FILE: MSMg01no459_i24.b1 PHD_FILE: MSMg01no459_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:31 2005CHROMAT_FILE: MSMg01no459_i24.g1 PHD_FILE: MSMg01no459_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAACCTGTCGATGGTTGTTTTGTGCCAGGTAAGTACTGTATGTTCAA
GGTTTGATATCCAGGGCTTATCCAGTTCTTTGGGTCCCCCCTCACCTTGA
TTTTGATTAAGATTTATCAGTAACTAACTGGGAAGAGATCGGACAACCAC
AGAGCAATTAATGGGTTCTGAGAAGGGGTAAGAATAAGCAGTAAACAAAA
ACCTTGCCCCAGAATCCTTCAGAAAACCAAGCAATTTTTGGTACCTATGG
TTTTATAGTGATCCCCTTTTTTTATCTTAGGCATGATGAAAATATGTGAT
TTCTTCTATTTCACAATTTTTTTTGTGGTAAGCTATTTGTTTATATTTAT
GCTCTGGATGCCTGAAATTAAATGCCTATCTTCAACCTCTTAGNTTTTGC
ATTTTATAGTTATGCTAGCTGCTGCTCATGGAATGTATCATCTATAACTG
GTTGGCCCCCCCGGATAATCCCTCTCCCTAACACTCACCCTTGTAAACTT
TTTCGGACGTTGGGTTCTTGCCTGTCTCCCTATAGTTCGTTTTTCTAAAA
CATGGTTCTTTTTTTCGTTATTCTCTATTACACCTCCCCCCTCTCATCAT
TAATCCTCTTATTTTCTTTCTCCCTCTTCTTCTTCGATCCTTTTATTCTC
TCCTCCTCTTCTTCCCCGCCCTCCCTACTTTCCCCCTTCCCCTTCCACAC
GTTTTTCTCGCATCCATATCTTTCCTTACG
TGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCATATTCTTTGATGTAGAAGCCAAAAGTG
CACTGGAGAAAATAGCATCTTCAACAAATTATTCTGATCAGGCTGGATGC
CTATGTGCAAAAGAAACAAAATAGATATGCACTTATCACCCTGCACAAAA
TGGATCAAGGACCTCAACATTAAGTCACATAATCTGAACATGATAGAACA
ACAAATTGGAAATAGCCTTGAAATTGTTGGCACAAGAAGAACTTTCTGAA
CATCCACTAAGAAGAATAATTAATAGATGAAATCTACTAAACTTAAAACC
TTCGGAAGTCAGAGGTCTTCATTCAATCTTCATTCAAAAGTCTGTACACA
AAACCATCATTTGGTCAAAGTGTCAGTCTGTTGAATATGAAAGAATCCTT
TCAATACAGGTATAATGTCTAAAATATATAAATTAAAAATTTTTAAAATA
TATAAAAACCCCATATACCTGTATATATAAGTAATATCCTATCCATCCAA
ATCCATTACCAAAATCCAAAACCAAAATCTAATACCAATCCCATACCCAA
ATTCATATCCACATACCAAATCCAAACCCCACTTCTAAACCCTACCCCTC
ACCCCATTCCCTTACTCTTTTTTCACCTCTTCCCTTTCATCCCCATTTTT
TTCTTTCCACTTTCCCTCCCTCTGTTATTCTCTTTTTTTCTTCCCTCTCT
TCTCCTTTCCTTTCCCTAGATTTTTTTCTTCACCGTCCCTCCACTCTTTC
CCCTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_i24.b1 MSMg01no459_i24.b1 CHROMAT_FILE:
MSMg01no459_i24.b1 PHD_FILE: MSMg01no459_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:31 2005
         (366 letters)



>mm_chr12_44121538_44122303
          Length = 766

 Score =  632 bits (327), Expect = 0.0
 Identities = 356/371 (95%), Gaps = 10/371 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttgtgccaggtaagtactgtatgttcaaggtttgatatccagggcttatccagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttgtgccaggtaagtactgtatgttcaaggtttgatatccagggcttatccagttc 260

                                                                       
Query: 61  tttgggtcccccctcaccttgattttgattaagatttatcagtaactaactgggaagaga 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaggtcccccctcaccttgattttgattaagatttatcagtaactaactgggaagaga 320

                                                                       
Query: 121 tcggacaaccacagagcaattaatgggttctgagaaggggtaagaataagcagtaaacaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tcggacaaccacagagcaattaatgggttctgagaaggggtaagaacaagcagtaaacaa 380

                                                                       
Query: 181 aaaccttgccccagaatccttcagaaaaccaagcaatttttggtacctatggttttatag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aaaccttgccccagaatccttcagaaaacctagcaatttttggtacctatggttttatag 440

                                                                       
Query: 241 tgatcccc-----tttttttatcttaggcatgatgaaaatatgtgatttcttctatttca 295
           ||||||||     ||     |||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tgatccccagagatt-----atcttaggcatgctgaaaatatgtgatttcttctatttca 495

                                                                       
Query: 296 caattttttttgtggtaagctatttgtttatatttatgctctggatgcctgaaattaaat 355
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 caattgtttttgtggtaagctatttgtttatatttatgctctggatgcctgaaattaaat 555

                      
Query: 356 gcctatcttca 366
           |||||||||||
Sbjct: 556 gcctatcttca 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)