BAC Information

Click to search

BAC

Clone NameMSMg01-459P07
Chromosome12 (Build37)
Map Location 4,195,863 - 4,196,146
singlet/doubletsinglet
Overlap geneAdcy3
Upstream geneLOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik
Downstream geneCenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P07.T7 (MSMg01no459_p07.b1)MSMg01-459P07.TJ (MSMg01no459_p07.g1)
ACCAG545426AG545427
length802797
length of high quality
(start - end)
220 (71 - 290)292 (59 - 350)
definitionCHROMAT_FILE: MSMg01no459_p07.b1 PHD_FILE: MSMg01no459_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:04 2005CHROMAT_FILE: MSMg01no459_p07.g1 PHD_FILE: MSMg01no459_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAAAGAGGATC
CGCGGAATTCATCTCCACTTTTCATTTCTTTTCTCTTTTCATGTCTATGT
CAAGTGTGTGTTTGTGTGTGTGTGTGTGGTGTTGGACCGCAAACCCAGGA
CATCATACAGGCTAGGCTAGAACTCTACTACCAACTCAAATATTTTTAAT
TTTCAGTTGCTTTATTTTTATTTTAATTATAACTAAAATTCCCCTTTCTT
TGTGTATATTTGCTTGATTGTTGCTGTGGCTCATTTCTAGGACTTTAGCT
TATTTTAAATGAAAATATTGTTTACTTTTAAGATATGTTTTGTATTACGA
GTGATCTTTTCTACATTCCATTACTCCCCCCCCCTCTCACACTATCTGCT
CTCTTTGCTCCGCCCCGCCCCCCGCTCATTTGTATTACCCTTTCCTTCCC
GCGTCTCCCTTCTTCTTTCCTTTATCCCTTTTTTTACTCCTCCCCTATTT
TACCCTCCCTCTCTTCTTCATCTTCTTCTCCCTCGCCTTTCTCCCCCTTT
CCTATCTACTACACTCGTCATTTTTTTTTCCCCCTCCTCCTTCCCTTGTC
TCCCCCATTCTGCATTTCCCCCTTTTCTCCCTCCCTTATCCTCTTTCCGC
CCTCTCTTCCCCCCGCCCTATCACATTCACCCCTCTTTTCTTATCCTCTA
TCCCTCTTCCCTCTCGTTTGTCTACTTCTTTTCCCCCCGTTTTTCTTCTC
CTATATCCCTATTTCTAATTTCCTCTCCACTCCCCCTCCCCACCCTATCT
TN
TCTCCGAAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCCTCCGCGGAATTCTTACGTCTTCCTGCTTGAAGCCCC
TCTCATGTCCCCTGCCTTTTTCCTCCATAGCCATTAGATTAGGGTTGAAA
GGTTCTCCCTCTCAACCCAGCAGGCAGATACAAACTGAGAACACGACTGC
TCCGAGGTGTGTTTGAGGGCAAGGTTTTTACTATAGGTGTGAGGAACAGA
ACAGCCAGAGGCACCGAAGCGTCTGGGGCAGGGAGGGAAAGCAGTGGACA
GTACATGGCCATCAGACTGCAGTTAGCCATGGGGGTGGGGGAGCAAGAAA
CGAATACAGGGATATGGCTTTATGAGGAGGGGACAAGATCGTGCCTGTTA
CACACCTCTCGCGTCTTACGTTCCTCCGTCTCCTTTTTTTCTCCATGTAA
TTTCTTTTCTTTGTTCCTGCCCCCCTCTCTTCTTTCCCCCTTCCCCCCCT
CTCTCCTCTTTCTCTTCTTTCTTCCCCCTCCGCCTTTATTTTTCTTCCTC
TCCTTTTACCTCTCCAACTATCTTTTTTCCTCTTTATCTCTTCCCACTCA
TACCTCCTTCCTTCGTCTCCCTCCCTCATATACATTCTTCCTAACTCCGC
TCTTACCCTTTTTTCTTTTTATCCTCTCCTTTTCTTCACACTTCCTCGCC
CTATCCTTTATCTCTTTTTCTTTTCCTCCCCTACTTTCTCCCCCTACCCC
TCACCTCTCTCACTATTTCCTTCCCCTTTTCCCCTTCTATATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p07.g1 MSMg01no459_p07.g1 CHROMAT_FILE:
MSMg01no459_p07.g1 PHD_FILE: MSMg01no459_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:04 2005
         (292 letters)



>mm_chr12_4195651_4196346
          Length = 696

 Score =  507 bits (262), Expect = e-148
 Identities = 277/284 (97%), Gaps = 4/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattcttacgtcttcctgcttgaagcccctctcatgtcccctgcctttttcctccatag 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttacgtcttcctgcttgaagcccctctcatgtcccctgcctttttcctccatag 272

                                                                       
Query: 73  ccattagattagggttgaaaggtt----ctccctctcaacccagcaggcagatacaaact 128
           ||||||||||||| ||||||||||    ||||||| ||||||||||||||||||||||||
Sbjct: 273 ccattagattaggattgaaaggttcagcctccctcccaacccagcaggcagatacaaact 332

                                                                       
Query: 129 gagaacacgactgctccgaggtgtgtttgagggcaaggtttttactataggtgtgaggaa 188
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 333 gagaacacgactgctccgaggtgtgtttgagggcaaggtttttactataggtgtgaggga 392

                                                                       
Query: 189 cagaacagccagaggcaccgaagcgtctggggcagggagggaaagcagtggacagtacat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagaacagccagaggcaccgaagcgtctggggcagggagggaaagcagtggacagtacat 452

                                                       
Query: 249 ggccatcagactgcagttagccatgggggtgggggagcaagaaa 292
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggccatcagactgcagttagccatgggggtgggggagcaagaaa 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 696
Length adjustment: 9
Effective length of query: 283
Effective length of database: 687
Effective search space:   194421
Effective search space used:   194421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)