Query= MSMg01no460_c03.b1 MSMg01no460_c03.b1 CHROMAT_FILE:
MSMg01no460_c03.b1 PHD_FILE: MSMg01no460_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:17 2005
(289 letters)
>mm_chr12_39488352_39489040
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 gtccaaatcaagactttttgatttctctgttagcccaatccactgagactcccagctaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtccaaatcaagactttttgatttctctgttagcccaatccactgagactcccagctaag 430
Query: 61 tcttcatcattgttttctgacttttgataaggcagagacaggttgagtggttggttcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcttcatcattgttttctgacttttgataaggcagagacaggttgagtggttggttcttc 370
Query: 121 tagtgtgtcccaagctgtacatgactctattatatatttttatattgtttttctccctat 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 369 tagtgtgtcccaagctgtacatgaatctattatatatttttatattgtttttctccctat 310
Query: 181 acaagtaaggaaggacaggctctgatgaccaagggcctccatgaacaacagaacaggtgg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acaagtaagaaaggacaggctctgatgaccaagggcctccatgaacaacagaacaggtgg 250
Query: 241 gatactggagaaagctttgttactcagtgtctaagcccacttcctcttc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gatactggagaaagctttgttactcagtgtctaagcccacttcctcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no460_c03.g1 MSMg01no460_c03.g1 CHROMAT_FILE:
MSMg01no460_c03.g1 PHD_FILE: MSMg01no460_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:17 2005
(617 letters)
>mm_chr12_39407602_39408619
Length = 1018
Score = 1141 bits (590), Expect = 0.0
Identities = 611/618 (98%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 1 atatggattctggtttgagtaagtctcaaaagcctggctgaaagacccaacttgtttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatggattctggtttgagtaagtctcaaaagcctggctgaaagacccaacttgtttcag 260
Query: 61 agaaaatatgccttcagtatcaacaactct-gggggaaaaaaaaactttgtcttttgaaa 119
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 261 agaaaatatgccttcagtatcaacaagtctggggggaaaaagaaactttgtcttttgaaa 320
Query: 120 gaagactgatggaactttactttggcaattgtcttaatagtttaagtgattatcacccag 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gacgactgatggaactttactttggcaattgtcttaatagtttaagtgattagcacccag 380
Query: 180 aaagcagaggccagaagatctctgatttcaaatacagcaccaaatttagatagagtccca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcagaggccagaagatctctgatttcaaatacagcaccaaatttagatagagtccca 440
Query: 240 aatctttctgggtcccctggatcataagtggcttacgacgcctaacctaccttcccccct 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aatctttctgggtcccctggatcataagtggcttacgatgcctaacctaccttcccccct 500
Query: 300 tttcaactgtcttcacacataaaagaacatgccagaaacattactcccaagataaaagaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tttcaactgtcttcacacataaaagaacatgccagaaacattactcccaagagaaaagaa 560
Query: 360 taaagaaggcccttaaagagatatttgaataccaaaatgtattgagattgcagaatccca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagaaggcccttaaagagatatttgaataccaaaatgtattgagattgcagaatccca 620
Query: 420 tcaatgaacacttatctgaaggtcaaatggaggatggctggagagattaatgctcctctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaatgaacacttatctgaaggtcaaatggaggatggctggagagattaatgctcctctg 680
Query: 480 gaaaggctcagataaatgctggactatcaaagaacacatagaaacttagatagtatgctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaggctcagataaatgctggactatcaaagaacacatagaaacttagatagtatgctt 740
Query: 540 ctagacttcctacttcactgctatataagaagagacagagttttaactcaggaaaaagca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagacttcctacttcactgctatataagaagagacagagttttaactcaggaaaaagca 800
Query: 600 aatgggttacccccatat 617
||||||||||||||||||
Sbjct: 801 aatgggttacccccatat 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
