Query= MSMg01no460_f11.b1 MSMg01no460_f11.b1 CHROMAT_FILE:
MSMg01no460_f11.b1 PHD_FILE: MSMg01no460_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:33 2005
(595 letters)
>mm_chr12_39611429_39612425
Length = 997
Score = 1064 bits (550), Expect = 0.0
Identities = 585/600 (97%), Gaps = 8/600 (1%)
Strand = Plus / Plus
Query: 1 ggtcgctaaaagaagatgaacagacggtctgaagctcattgtttaactgtaacttcatgt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtcgctaaaagaggatgaacagacggtctgaagctcattgtttaactgtaacttcatgt 260
Query: 61 aaaagttaaggctatgggtttgctttttagaggccaataaaattaaaccaccttgggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagttaaggctatgggtttgctttttagaggccaataaaattaaaccaccttgggaat 320
Query: 121 aaaaaattcagttactttttaaggaaaattttattctgttgtccttttgtgaaacaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaattcagttactttttaaggaaaattttattctgttgtccttttgtgaaacaggca 380
Query: 181 cttttgaaaacatggcttatttggtagcaatattgtagtttggagaaagtacagttgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgaaaacatggcttatttggtagcaatattgtagtttggagaaagtacagttgaat 440
Query: 241 aatatttt----atgcctctgctattttgttctctagctatttgccatatatcaaaacct 296
|| | | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aaaa---tccaaatgcctctgctattttgttctctagctgtttgccatatatcaaaacct 497
Query: 297 gtcaattgtattccaatagggaatataatttcactgacaaatatttattcgcatttcatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtcaattgtattccaatagggaatataatttcactgacaaatatttattcgcatttcatt 557
Query: 357 ctgtgacaaattgtggcaagaaagtgggacctttgtgtttgattggctttttctcttttg 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctctgacaaattgtggcaagaaagtgggacctttgtgtttgattggctttttctcttttg 617
Query: 417 taacctatatccttgagtcctcctgggataacaaaatccttcaacacaggatttggatag 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taacctatatccttgagttctcctgggataacaaaatccttcaacacaggatttggatag 677
Query: 477 tggttgaacagggaagtttagaattagatgaacatgcattttt-atcttggaatgaactg 535
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 678 tggttgaacagggaagtttagaattagatgagcatgcattttttatctcggaatgaactg 737
Query: 536 tgggaaactcagtgctgactgatcctttgtattctctctccatgatttggaaacacattc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgggaaactcagtgctgactgatcctttgtattctctctccatgatttggaaacacattc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 997
Length adjustment: 10
Effective length of query: 585
Effective length of database: 987
Effective search space: 577395
Effective search space used: 577395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_f11.g1 MSMg01no460_f11.g1 CHROMAT_FILE:
MSMg01no460_f11.g1 PHD_FILE: MSMg01no460_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:33 2005
(494 letters)
>mm_chr12_39773789_39774682
Length = 894
Score = 756 bits (391), Expect = 0.0
Identities = 400/403 (99%), Gaps = 2/403 (0%)
Strand = Plus / Minus
Query: 1 aaagtttgaaccttaaataaagaaaaactgattgtggagttataaatgagtga-tttaag 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 402 aaagtttgaaccttaaataaagaaaaactgattgtggagttataaatgagtgattttaag 343
Query: 60 agtttaatttctactatcttagtgaaatcaaatgtattaagtatagattctatatcaagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtttaatttctactatcttagtgaaatcaaatgtattaagtatagattctatatcaagt 283
Query: 120 acaaggtcaggcctgtccaacttgttattccttttttatgctgcatgttctacagtgtca 179
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 282 acaaggtcaggcctgtccaacttgttattcc-tttttatgctacatgttctacagtgtca 224
Query: 180 cctgtttaatgttcccaaaagttaattgaagcatagaaagggcaactcacctgcacaatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cctgtttaatgttcccaaaagttaattgaagcatagaaagggcaactcacctgcacaatg 164
Query: 240 ttccacagcccatcagtgctagactctggattcaagtccaaatggtctgattcaatgcca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ttccacagcccatcagtgctagactctggattcaagtccaaatggtctgattcaatgcca 104
Query: 300 gagcatccttccatcaccagcatacaggacctcttggctagactgcataccatactggct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gagcatccttccatcaccagcatacaggacctcttggctagactgcataccatactggct 44
Query: 360 gtgaactgtaggattattaaacatggaacaacagtgaagtgaa 402
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 gtgaactgtaggattattaaacatggaacaacagtgaagtgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
