BAC Information

Click to search

BAC

Clone NameMSMg01-460I01
Chromosome12 (Build37)
Map Location 66,810,156 - 66,810,597
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460I01.T7 (MSMg01no460_i01.b1)MSMg01-460I01.TJ (MSMg01no460_i01.g1)
ACCAG545845AG545846
length719741
length of high quality
(start - end)
364 (315 - 678)451 (67 - 517)
definitionCHROMAT_FILE: MSMg01no460_i01.b1 PHD_FILE: MSMg01no460_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:46 2005CHROMAT_FILE: MSMg01no460_i01.g1 PHD_FILE: MSMg01no460_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAAAGAGGCCGCGNGAATCTT
TGATTACTTCAAAAGGCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTCAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTTATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCA
GGATTANATCCTCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTC
TACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCAGTATACCAGTACCATGCAGTTTTTATCATAATTGCCCTGTAG
TAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTT
GACAAGAGTTTTTGCTATN
TGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTCTGCTGCCCTTTGCAAGCATCTGCAATTGT
GCACAAATACCCCTGAAGATAAGCATGCACATACACTATAAAAAATAAAA
ATCTAAAAGAAAAAGAAAAAGAAAAAGGGCTTTACTAAAAGGATAATCAC
AATAAGAGCTTTAAGCCGAAAGAAACCAAGATTAATTCATGTGTAAGTAA
AAAGGATATTTGGTATACATATACAACATTTTTACAGACCAGCTAAGCAG
CGTTTTGTATTCATAATAAACCAACTAAGGAAAATAGGAAAGTTCCATTT
TCTTTCTTTATACTAATATGCATAGAAAATGTGGCCTGCTTTACTTCCCT
TCTATAGAAAGCAATTACACTGAAATATATGAAAATTGTTTCTACCCACA
TTATCAAAAGGTCAACTATATTCTTCCACTAAAGAGCTTACGGAAATAAA
TGACTTTTTTTTTTTTTTAGTCCNNACAATAAAAAGAATAAGATAAAATG
GTGGACCTATCTTTCCACCGAAAGGGAGAAATTGGGGTGGGCCTCCCCTT
TTGCTGGGTTTAAATCCGGGGAGGGGGGAAAATTTAAGGGAGGGGGAATC
CCCCCCTTAAAAGGGGGAAAAAAAGTGTGGGGGGTTTTTAAGGGGGCCTA
ATACCGGGGGGGGGCCCCGGTTTTTAAAATAAATTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_i01.g1 MSMg01no460_i01.g1 CHROMAT_FILE:
MSMg01no460_i01.g1 PHD_FILE: MSMg01no460_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:46 2005
         (451 letters)



>mm_chr12_66809956_66810798
          Length = 843

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/450 (98%), Gaps = 8/450 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctgctgccctttgcaagcatctgcaattgtgcacaaatacccctgaagataagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tcctctgctgccctttgcaagcatctgcaattgtgcacaaatacccctgaagataagcat 583

                                                                       
Query: 61  gcacatacactataaaaaataaaaatctaaaagaaaaagaaaaagaaaaagggctttact 120
           ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 582 gcacatacactataaaaaataaaaatct------aaaagaaaaagaaaaagggctttact 529

                                                                       
Query: 121 aaaaggataatcacaataagagctttaagccgaaagaaaccaagattaattcatgtgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaaaggataatcacaataagagctttaagccgaaagaaaccaagattaattcatgtgtaa 469

                                                                       
Query: 181 gtaaaaaggatatttggtatacatatacaacatttttacagaccagctaagcagcgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtaaaaaggatatttggtatacatatacaacatttttacagaccagctaagcagcgtttt 409

                                                                       
Query: 241 gtattcataataaaccaactaaggaaaataggaaagttccattttctttctttatactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtattcataataaaccaactaaggaaaataggaaagttccattttctttctttatactaa 349

                                                                       
Query: 301 tatgcatagaaaatgtggcctgctttacttcccttctatagaaagcaattacactgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tatgcatagaaaatgtggcctgctttacttcccttctatagaaagcaattacactgaaat 289

                                                                       
Query: 361 atatgaaaattgtttctacccacattatcaaaaggtcaactatattcttccactaaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 288 atatgaaaattgtttctacccacattatcaaaaggtcaactatattct--cactaaagag 231

                                         
Query: 421 cttacggaaataaatgactttttttttttt 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 cttacggaaataaatgactttttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 843
Length adjustment: 10
Effective length of query: 441
Effective length of database: 833
Effective search space:   367353
Effective search space used:   367353
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)