BAC Information

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BAC

Clone NameMSMg01-460P24
Chromosome12 (Build37)
Map Location 27,336,079 - 27,336,187
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042974, LOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460P24.T7 (MSMg01no460_p24.b1)MSMg01-460P24.TJ (MSMg01no460_p24.g1)
ACCAG546225AG546226
length799685
length of high quality
(start - end)
84 (60 - 143)113 (68 - 180)
definitionCHROMAT_FILE: MSMg01no460_p24.b1 PHD_FILE: MSMg01no460_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:25 2005CHROMAT_FILE: MSMg01no460_p24.g1 PHD_FILE: MSMg01no460_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGATCCGCGGAATTCCAA
CTTTACAATCAGTGAAGAAGGCAAGGCCAACCGATACCAGAGCATCATCA
ACAAAAACCAGAGACAGCAAAGCCCAATGAAGACCAGCAAGAATGGAAGA
GAAAAACAAGTGCCACACGTGGTTGTCCNTGGGCTTGTGGAGTATTNATN
GTACTCTTGGGTGGGTGCAGAATGTCCTCTCAAGCTCCTGGCTCAAGAAA
ACATTCCCATGCCCCTTTTTCCAGGCAGCTTTCCATAAAAACACCATGGG
GCCCGCTCCTCACAAATGTCCTCCCAGGGGTCTGCTTCCGCCAAAGATTC
CACTCAAAAGAAAAGTTTTCCAAAAAAAATTCCATGGACAAACTGAATTC
CCCCAAAAAACCAAAATTTCCCCCTTTCCTTAAAAACCCCCAATTTTTAA
GTTTGGGAACACCCCTAAAATTGGTTAAAAACTAAACCTTTTAGACTCTT
TGAAGACTTAAAAGGAGGGAAAAAAAAATCTCCGCCCCTCCTCTTTAAAT
TTAAATCCCCCCACTTTAAATAGGGGTGGAAACCTTTTTCTATTTTTCAA
AAAAATCCCTTTGTTATGGGGAAAAACACACCTGCGTTTTTTTAATAAAT
GTTTTTTATAAAAATCTCTCTCCTTCCTCTTACCACTATATAAAATAATA
CATCTTTTATCTTCCCCACTATTTTTCTTTAATACTTTTCTCCTTTTTTC
ACCCTCCATTATAATATTTTATTATTTTCTTTTCTGATAGTGTGTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTACACTTCCCACAGAATCCTCTGCTGTGTTA
AAATGCCCTGGCATGGAGAGTAAATTGTTCAAACCTGGCAGGGACAAGCT
ATAAAAGTGAACAACTCTGGAGGAAGATNAGCCCTCCNTAGNGTACTAAT
GCAGTAAATGTGTTATGNCAGCTAGGGCAATGNCTNNGGGCGGGGGNNNN
CTTTCACNNNCAAAAAAAAAGGGGGAATTCGGGAAACCCTTTTACCACAA
AACAGGGCGGTACGCCCCCCCCGGGAAGGAAAAAAAAACGGCTTTTGGGG
GGTGGGAACCCCCCATTCCCCCCCCGGGGGGCCCCCAATGGGAAAAACTT
GGGTGTCCCCCCCCTAAAAAAAACCCTTTCCCAAAAAAAATTTGTTTGTG
GGAGGAACAAAACAAAGGGGAAACACCCCCCCCCCCCCTGTGGGGAAAAA
AAAAAAAAAAAAAAACGGGTGGCCCTTACACCCACCCACCTCAATCCCTC
CTCCCCCACACAAAAAAATAACACACCCTCTCTTCCTTCTCTTCCCCAAA
TTATTCCCCCTTCCTCCCACCATTTTACACCTTCCCCCCCCCCTTTCCTT
TCCCCCCCCCTTTTCTCTTCATCCTGGTGTGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_p24.g1 MSMg01no460_p24.g1 CHROMAT_FILE:
MSMg01no460_p24.g1 PHD_FILE: MSMg01no460_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:26 2005
         (113 letters)



>mm_chr12_27335879_27336391
          Length = 513

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacacttcccacagaatcctctgctgtgttaaaatgccctggcatggagagtaaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacacttcccacagaatcctctgctgtgttaaaatgccctggcatggagagtaaattg 260

                                                            
Query: 61  ttcaaacctggcagggacaagctataaaagtgaacaactctggaggaag 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaacctggcagggacaagctataaaagtgaacaactctggaggaag 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)