BAC Information

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BAC

Clone NameMSMg01-461A16
Chromosome12 (Build37)
Map Location 37,640,109 - 37,800,326
singlet/doubletdoublet
Overlap genenone
Upstream geneAgr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461A16.T7 (MSMg01no461_a16.b1)MSMg01-461A16.TJ (MSMg01no461_a16.g1)
ACCAG546257AG546258
length746766
length of high quality
(start - end)		620 (41 - 660)113 (71 - 183)
definitionCHROMAT_FILE: MSMg01no461_a16.b1 PHD_FILE: MSMg01no461_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:29 2005CHROMAT_FILE: MSMg01no461_a16.g1 PHD_FILE: MSMg01no461_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,640,109 - 37,640,722)(37,800,214 - 37,800,326)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCAAGGTATTTCCTCTGCTTTAAGCAATGAATTCTTTAGCAGAGGAGTCT
AAACTGTATCCATGGCAACCCAGCAGCTTTAGTATAGACTAAGTGCTTTC
ATTACTAAAATTTTAAAGGCTCTCCTTGGAATATATACTTTGTTACTGAT
TTTGACTAGAACATATGTGATTTTCTTTCATAGAAAAAAGTGCTATAGTT
TTGCTTTTTATGGATTATATTTTGAAGTCATCTAAAATAAGGACTTGCTA
GTTAGGTCTTTCTTTATTAAAGTTACAGTTACTGTTTGGTAAACATTCTA
ACAATGACAAACGATCAGCTAGTCTAATTTTATTTATCGTATGAAAATAT
ATCTCAACCTAGAAAAGTAAAACTCCTAAGAAACTGAGTCATAAATTTTT
TTAATCATCATAATAAGAGTGCTAAAGACCAGAGATAGACCATCTTAGAA
GGAGCAACGCATCTCATGCATTGTCCAACTATGTCCAGTCTCACTATACA
GCTATCAATACATGCTATACAATTACACTTGCTAAAGAATTAATTCCCCA
GTCAAACAAATACGTACAACGGGCAGTTTAATATGTTTTATTTCAAACAT
TATCTTGAAGGTCTCAGATAAAAATTAATAGCATAAAACAAATTTTGTGT
CTTAATGAAGAAATGACTTGTGTATCAGTCAGGTTGGAATACACAC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCACATGAAGTAGTCTAGGTCCCTTTTTC
GTGATTTTATTAGTTATGACTTCCTATAACTTCTTTCTTTTATTCCTTTG
TTATTTTGTTGTTGTTGTTGTTTGGTTTGTTTTGGAGAAGCACGCCACGC
TGGCTAGATATGCCTCCTATTTTTATAATACCTTTCGTTCCTCTTTGATT
CATCAATATCTCTTAAATCTGGATATACCTCTATCCGAGGTATACTGATT
ATTGCGCCGATATACCGCTATAATTTTTGATTGACTTTGACGCACTTCTG
AGACAACGATCTATTGATTTACGTGTCCCTTTACTCTCTTCTCTTTGTCT
CCTGTTCCTCCCCCCCACTGTTGTCTCTGTCCATCTTGCCTTTGTCCCCT
TTTCCGATTTTGTTATCTCTTCTCCCCCCTTTCTGTTCTATCGCTCTTCT
TTTTTTATTCTTCACTCTTTCATCCTCCCCCCTCTTTTCTTCGCCTTCTC
TTCTTCCTTTTTCCCCCTTCCTTCTCTTTTCGTTCCCCCTTTTCCCTCAT
CACTCTTCCTCCCCCCTTCTTTCTTTTTTTTTCCTCGTGCTTATCATTTT
CCTTCTCCCCGACTCTTAATCTACCTCTCTAACCCCTCTTCACCCCCCCC
GCCTCTTCCCCGCCCTTTCTTTCCTCTCCCTGTTTCGTGCTTTCTCCTTC
TTTTTTACCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_a16.b1 MSMg01no461_a16.b1 CHROMAT_FILE:
MSMg01no461_a16.b1 PHD_FILE: MSMg01no461_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:29 2005
         (620 letters)



>mm_chr12_37639903_37640922
          Length = 1020

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaggtatttcctctgctttaagcaatgaattctttagcagaggagtctaaactg 66
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaggaattccctctgctttaagcaatgaattctttagcagaggagtctaaactg 266

                                                                       
Query: 67  tatccatggcaacccagcagctttagtatagactaagtgctttcattactaaaattttaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatccatggcaacccagcagctttagtatagactaagtgctttcattactaaaattttaa 326

                                                                       
Query: 127 aggctctccttggaatatatactttgttactgattttgactagaacatatgtgattttct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggctctccttggaatatatactttgttactgattttgactagaacatatgtgattttct 386

                                                                       
Query: 187 ttcatagaaaaaagtgctatagttttgctttttatggattatattttgaagtcatctaaa 246
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcatagaaaaaagtgctatatttttgctttttatggattatattttgaagtcatctaaa 446

                                                                       
Query: 247 ataaggacttgctagttaggtctttctttattaaagttacagttactgtttggtaaacat 306
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 ataaggacttgctagttaggtctttctttagtaaagttacagttactgtttggtaaacat 506

                                                                       
Query: 307 tctaacaatgacaaacgatcagctagtctaattttatttatcgtatgaaaatatatctca 366
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 tctaacaatgacaaacgatcagctagtctaattttatttatcgtatgataatatatctca 566

                                                                       
Query: 367 acctagaaaagtaaaactcctaagaaactgagtcataaatttttttaatcatcataataa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acctagaaaagtaaaactcctaagaaactgagtcataaatttttttaatcatcataataa 626

                                                                       
Query: 427 gagtgctaaagaccagagatagaccatcttagaaggagcaacgcatctcatgcattgtcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagtgctaaagaccagagatagaccatcttagaaggagcaacgcatctcatgcattgtcc 686

                                                                       
Query: 487 aactatgtccagtctcactatacagctatcaatacatgctatacaattacacttgctaaa 546
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 687 aactatgtccagtctcactatacagctatcaatacatgctgtacaattacacttgctaaa 746

                                                                       
Query: 547 gaattaattccccagtcaaacaaatacgtacaacgggcagtttaatatgttttatttcaa 606
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 747 gaattaattccccagtcaaacaaatacgtacaacgggcagtttaatgtgttttatttcaa 806

                         
Query: 607 acattatcttgaag 620
           ||||||||||||||
Sbjct: 807 acattatcttgaag 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no461_a16.g1 MSMg01no461_a16.g1 CHROMAT_FILE:
MSMg01no461_a16.g1 PHD_FILE: MSMg01no461_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:29 2005
         (113 letters)



>mm_chr12_37800014_37800526
          Length = 513

 Score =  219 bits (113), Expect = 6e-62
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacatgaagtagtctaggtccctttttcgtgattttattagttatgacttcctataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcacatgaagtagtctaggtccctttttcgtgattttattagttatgacttcctataac 254

                                                                
Query: 61  ttctttcttttattcctttgttattttgttgttgttgttgtttggtttgtttt 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttctttcttttattcctttgttattttgttgttgttgttgtttggtttgtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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