BAC Information

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BAC

Clone NameMSMg01-461G21
Chromosome12 (Build37)
Map Location 89,092,152 - 89,092,578
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992
Downstream geneLOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461G21.T7 (MSMg01no461_g21.b1)MSMg01-461G21.TJ (MSMg01no461_g21.g1)
ACCAG546554AG546555
length756768
length of high quality
(start - end)
424 (69 - 492)474 (73 - 546)
definitionCHROMAT_FILE: MSMg01no461_g21.b1 PHD_FILE: MSMg01no461_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:01 2005CHROMAT_FILE: MSMg01no461_g21.g1 PHD_FILE: MSMg01no461_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGAATT
CCTTCTATTCCCCCACCATGTGGATCTCCAGAATCCAACTCCAGTTGTCA
GGCTTGGTCATGAGAGGCTTTATTCTCTGAGCCGTTATGCTGGCCAGTAA
TTTAACATCTTCATATTATTCAACGCTTTATAAAGAATTCTGTTTGTTTC
ACATAGATGCTTCTCATACAGAGAGCTGATAACATTCATCTCTTTGCCTT
GTTTTTGCACAAAGGTAGGACAAGGCTAAACAAAGTTGGAGTGTTTGCAT
CTATTTGAAAGATCTTTATGTCTTTCTTGCCTTCACTAGTGGTTGATGTT
ACACCTTTCAATAAAGTATTGCAAGGTGGTTATGGTTTAATGTTGTCATT
TGTCTTTTCTTTTCTCTTTTTTTCTTTTTTTCTGTAAGAATACTTCTTTA
AAGGTAACATTTCAGTGAGACACAGTGTCCCACATATAAAAGTCAAGCAC
TATAACCACATAGGCAGGAGGACCAGTATTTTACTGTCAGCCTTGGTTAC
TGGAGACTCTGCGATGGTTTGAATATGCTTGGCCTACGCATTGGTCCTAT
TATAATGTGTTGACTTTGTTTTAAGAACTGTGTCCCTGTTGATAGCCACT
AGTTCTTGTTTTCCCCTTATACTTCTTTTATACTTCCCACCATCCTTATA
TTTTCTTCTTACCTCTTTCACACCTTCCTTTTCTTTTTTTTTTACCCCCT
TTCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGTTCCAAACAGCAATTGGTTATTGC
AGAATATTGATATTTGACCTATTACATACCATCATTTTAAATACAATTGA
TACTCATCCTAAAAATAAGTTAAAAATTGCTTATATGCATGCTTTTGTTT
GTTTCTTCTATAAATTCACGCATGCATCACATTTACTGTATTTAATAACA
ACCCATCTATGGGGAAAAGGTATATGTGAATTAGATCACATGTTTATTCT
TTTGAGTTTCTGCCTGCTTCAGCACAGATAATTTACGTGCTGTAGATGGT
GTTTTAAAATGTTAAAGATTGCCTAAAAAAGACCTCTTAAGACAATACCA
TGCTAGATTTATATCCCAGGTAGATTATAAATCTTATACAAAAATAATTG
GCCATATAATCTCATTCTTTATATCATCAAAATAGTAATGGCTTGAGATA
ATAATTTGGTATTTTAAATAAATAAATAAATAAATAAATAAATAACTAAA
TAAATAAATGTGCATGTCTTTTGAAAAGATTTGCTTCTCAGTGTCCTCAG
TTTCTACCTGCTCCACACATTGGGTGTTAAATTCTCCGAGGAACCATAAT
TCTTTTTATTTCCAACGGGCAACTCCCTTTTTGATTTTTACAAAACAAAA
TAAATTCACCTGGTGACTTCAATACCTTTTTTAATTCTCCCCCCAAATAA
AACAAATTTAGCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_g21.b1 MSMg01no461_g21.b1 CHROMAT_FILE:
MSMg01no461_g21.b1 PHD_FILE: MSMg01no461_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:01 2005
         (424 letters)



>mm_chr12_89091952_89092780
          Length = 829

 Score =  688 bits (356), Expect = 0.0
 Identities = 410/432 (94%), Gaps = 13/432 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggatctccagaatccaactccagttgtcaggcttggtcatgagaggctttattctct 60
           ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 201 tgtggatctccagcatccaattccagttgtcaagcttggtcatgagaggctttattccct 260

                                                                       
Query: 61  gagccgttatgctggccagtaatttaacatcttcatattattcaacgctttataaagaat 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagccattatgctggccagtaatttaacatcttcatattattcaacgctttataaagaat 320

                                                                       
Query: 121 tctgtttgtttcacatagatgcttct---catacagagagctgataacattcatctcttt 177
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 321 tctgtttgtttcacatagatgcttcttctcatacagagagctgataacattcatctcttt 380

                                                                       
Query: 178 gccttgtttttgcacaaaggtaggacaaggctaaacaaagttggagtgtttgcatctatt 237
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 381 gccttgtttttgcacaaaggtaggacaaggctaaacaaagtgggggtgtttgcatctatt 440

                                                                       
Query: 238 tgaaagatcttta--tgtctttcttgccttcactagtggttgatgttacacctttc-a-- 292
           |||||||||   |  ||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 441 tgaaagatc---aaatgtctttcttgccttcactagtggttgatgttacacctttctatg 497

                                                                       
Query: 293 ataaagtattgcaaggtggttatggtttaatgttgtcatttgtcttttcttttctctttt 352
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 498 ataaagtattgcaaggtggttatggtttaatgttctcatttgtcttttcttttct-tttt 556

                                                                       
Query: 353 tttctttttttctgtaagaatacttctttaaaggtaacatttcagtgagacacagtgtcc 412
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 tttctttttt-ctgtaagaatacttctttaaagggaacatttcagtgagacacagtgtcc 615

                       
Query: 413 cacatataaaag 424
           ||||||||||||
Sbjct: 616 cacatataaaag 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 829
Length adjustment: 9
Effective length of query: 415
Effective length of database: 820
Effective search space:   340300
Effective search space used:   340300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)