BAC Information

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BAC

Clone NameMSMg01-461I24
Chromosome12 (Build37)
Map Location 35,455,674 - 35,456,074
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461I24.T7 (MSMg01no461_i24.b1)MSMg01-461I24.TJ (MSMg01no461_i24.g1)
ACCAG546656AG546657
length764795
length of high quality
(start - end)		425 (46 - 470)---
definitionCHROMAT_FILE: MSMg01no461_i24.b1 PHD_FILE: MSMg01no461_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:12 2005CHROMAT_FILE: MSMg01no461_i24.g1 PHD_FILE: MSMg01no461_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGACTGTACCAAAGCTAACAAAGGTTTGAAAGCACCTAGAAGA
GTCTAGCATGTGGACAGGTGGCTCTTAGAGACTGGCAGCATCATCATGTT
CTAAGAAGATGTTAGAAAGGCAAATTTGTGGGCATTCGCACACTTGACAT
AGCAGAACCTGTGGGATGTTGTGAGTGGTCTTTTACCAACAAACATTCCA
GGTCAATCTGAGGCCCAAAGGTCTCTCCCACCTACAAACCGTAAGAAGAT
TATGGGATCTTGAGAAGACTTGCCTGTCTCATTCCAAGGTGATAGATTTT
AAATCAGAAATAACTGAGTAGTCACTAATTTGATTGCACTTATTTGAAGA
GGCCCAATTAGGTTGTCTGCTATTAATTGGAGGGTTTATGGTAGAAATTA
AGCTCAGTTAAAGGAAATTAAGATAGTTACATTCCATACACACCTGGCTT
TATGGCTTCTAAAACAGAAACAGAATTTTACAAAGAATTTTCTTCTAAAA
TTCCCCCCTTTGGTCTTCCTCCCTTCCTCCTTTCTCCCCTCCTCCCCCCT
TCTCCTTCTTTTTCTTTTTTTTTGGAAAGGCCAGCCTGCCCACACCCCCT
AAATAAATGGAGGGGAGCTTGAATCCTAATTTCCTGCCCCGGCCCCTTGT
GGGGAAAAAAGGAACCACTTTCTCTCGCCTCTTTTTTAAAGAGGGGGTCC
TCCTCCGGTCTTTN

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTAATGGTCGACTATAGGCTGAAAGG
TAAGCCAAGTAAGTGTTTTCATATTANAAANNGAAGAAGANNAAGAAAGA
ANANGAAAGAAGGGANAANNGAAGGANNAAAGTGATGAAANNNNAAGAGT
GAAAGNNNNNCTNTTTCTTTTTGCTTTGTTATTTTTTGTTGTTTTTGTTT
TTTTGTTTTTGTTTTTGCTGTTTTTTTTGGGNNNNCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTT
TTTTTTTTTTTTNCCCCNNNNNNNNNNNNNNNNNNNNNNNNTTTNNTTNN
NNNNNNNNNNNTNTNTTTTTNTNNTNNNTTTNTTNTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTNNTNNNNNNNTNNNNNNNNNNNNTNTTNNTTTT
TTTNNNTTTNNNNTNTNNTTTTNNNNCNNTNNTNNNNNNNCNNNNCTTNT
TTNTTTTCTCCTCCCTTCCCNCNNNNCCNCTTCCCTCTTCCCCCCCCCCC
CCTCCCCTCCCCTCCCTCCCTTCTTTTCTNCCTTCTTCTTTTCTTCCCCC
CCCTCTTTTTCCTCTCTCTTCTNCTCTTTTTTCTCTCTNCTCTNNCCCCC
CCTTTTCTTCCCCCTTTTCTTCTTTTTCTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_i24.b1 MSMg01no461_i24.b1 CHROMAT_FILE:
MSMg01no461_i24.b1 PHD_FILE: MSMg01no461_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:12 2005
         (425 letters)



>mm_chr12_35455255_35456079
          Length = 825

 Score =  729 bits (377), Expect = 0.0
 Identities = 396/403 (98%), Gaps = 2/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  aaagctaacaaaggtttgaaagcacctagaagagtctagcatgtggacaggtggctctta 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aaagctaacaaaggtttgaaagcacctagaagagtctagcatgtggacaggtggctctta 761

                                                                       
Query: 83  gagactggcagcatcatcatgttctaagaagatgttagaaaggcaaatttgtgggcattc 142
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| 
Sbjct: 760 gagactggcagcatcatcatgtcctgagaagatgttagaaaggcaaatttgtgggcattt 701

                                                                       
Query: 143 gcacacttgacatagcagaacctgtgggatgttgtgagtggtcttttaccaacaaacatt 202
           ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct: 700 gcacacttgacatagcagaacctgtgggatgt--tgaatggtcttttaccaacaaacatt 643

                                                                       
Query: 203 ccaggtcaatctgaggcccaaaggtctctcccacctacaaaccgtaagaagattatggga 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccaggtcaatctgaggcccaaaggtctctcccacctacaaaccgtaagaagattatggga 583

                                                                       
Query: 263 tcttgagaagacttgcctgtctcattccaaggtgatagattttaaatcagaaataactga 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tcttgagaagacttgcctgtctcattccaaggtgatagattttaaatcagaaataactga 523

                                                                       
Query: 323 gtagtcactaatttgattgcacttatttgaagaggcccaattaggttgtctgctattaat 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtagtcactaatttgattgcacttatttgaagaggcccaattaggttgtctgctattaat 463

                                                      
Query: 383 tggagggtttatggtagaaattaagctcagttaaaggaaatta 425
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tggggggtttatggtagaaattaagctcagttaaaggaaatta 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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