BAC Information

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BAC

Clone NameMSMg01-461K13
Chromosome12 (Build37)
Map Location 82,842,836 - 82,843,067
singlet/doubletsinglet
Overlap geneMap3k9
Upstream geneGm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821
Downstream genePcnx, Sipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461K13.T7 (MSMg01no461_k13.b1)MSMg01-461K13.TJ (MSMg01no461_k13.g1)
ACCAG546730AG546731
length750725
length of high quality
(start - end)
232 (83 - 314)241 (73 - 313)
definitionCHROMAT_FILE: MSMg01no461_k13.b1 PHD_FILE: MSMg01no461_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:20 2005CHROMAT_FILE: MSMg01no461_k13.g1 PHD_FILE: MSMg01no461_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXAACTTTTCCAAACAGGCGNGG
NAATCTAGAAATTGCAAAAAATCTTTAGGGNCATCATTGAACCCCCTGCA
ATCACTATTTCTAAAGGACGCTTGTAACCTCAGAGAAAGTCCATGCCTTC
TGCTTGTCACTCTCCCAGCATGACCTTCTCTGCCTCTGGAGCAGCTGCTC
ATTGCCACCATGTCAGTGGAACCACACGATGCCTGCTCCTCTGTCACTCT
CACCTTACATTTAACAGGATGGTTACAGGTCCATCCATGTTGTAGCTTCA
TTAGAAATTCATTCTTCTTATGGCTTTTTAGTATTCCACGATTCTAAAGT
CAGGAGGTCCATGCTTATTCAGTCAGTCATTCACCATGATAGATAGTGAG
TGGCTTTCACTTTGGCCAATGTTATGAACAAGGCTGCCGTGGACATGGAC
ACACAGATTCTTTTGTGACCATACTTTTTCCATTTACCCGGGCATGTACC
TTAATTGCATGAAGTTAACCAACTAACTATATGTGTAACTTTTTGATGCC
CCATATAACTGTTACATATGCTCTGCGTATATTCCATTTGGCCTAAAACT
ACTTCCGGTACCTTCCTGTAACCCCTTTGTTGCCCGCCTGTTCTTTTTTT
CCTTTGACCTCCATCTCTAAGGTTAAACCCTTCCATTGAGCTTTGTCCTT
CCCTATATTATCCTCCCTCGTTTTGCTTCTTCTTTTAACCTCTTTAACCC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCAAAGT
CATAGAGATCTGCTTGCATCTGCCTCCCAGGTGCAGGGATTAAAGGAATG
TGCCAACACTGCCTGGCTAACTTTAATATCTATCAACCCTCTAACCATAG
TCCCAAAGGAACTATATTAATTTTGAATAAAGATAACACTCTCAATGACT
TATGTAACTCTCTCTTAGCCCTACCTCTTGGTAGCTATACCACCTCAGCA
GTACTAGCACCACTTTTTTTACCAAGCCTCCAACACACAAACCTTTGAAG
CCACTCCAAAGCATAAATGACTCACAGCCTGGAAGAAGACAGAATTCTTT
TTACATGATTTTTGAGTTGTTATTAGAAATAGCATTGGTGTTAGTATCTT
TAATCCATTTTCTCTTCATCACAGAGTTAAGCAAAGGATGACAGTGTCAA
TACACAGCGTGGCAAGAAGAGATATGAGATATGAATTCTACAATCTTTAC
TTTGAAAGAAGGTATCATGTTGTCCTATTTCAGTGGATGTGTAGTACTCT
GCACTTGTCACCTAGCTGACAACTCACTGATGACTTTGGAGGAAGTGTCA
AGGCCACTCCTTCTTTTAATCCGTCGCGTACATATTGCTACCCAACTTTC
AGCCATGTTTTCCCTGAAGGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_k13.b1 MSMg01no461_k13.b1 CHROMAT_FILE:
MSMg01no461_k13.b1 PHD_FILE: MSMg01no461_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:20 2005
         (232 letters)



>mm_chr12_82842742_82843373
          Length = 632

 Score =  402 bits (208), Expect = e-117
 Identities = 226/232 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcattgaaccccctgcaatcactatttctaaaggacgcttgtaacctcagagaaagtcc 60
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 326 atcattgaaccccctgcaaccactatttctaaaggacgtttgtaacctcagagaaagtcc 267

                                                                       
Query: 61  atgccttctgcttgtcactctcccagcatgaccttctctgcctctggagcagctgctcat 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 atgccttctgcttgtcactctcccagcctgaccttctctgcctctggagcagctgctcat 207

                                                                       
Query: 121 tgccaccatgtcagtggaaccacacgatgcctgctcctctgtcactctcaccttacattt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 206 tgccaccatgtcagtggaaccacacgatgcctgttcctctgtcactcacaccttacattt 147

                                                               
Query: 181 aacaggatggttacaggtccatccatgttgtagcttcattagaaattcattc 232
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aacagaatggttacaggtccatccatgttgtagcttcattagaaattcattc 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)