BAC Information

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BAC

Clone NameMSMg01-461P01
Chromosome12 (Build37)
Map Location 45,045,390 - 45,045,720
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507
Downstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P01.T7 (MSMg01no461_p01.b1)MSMg01-461P01.TJ (MSMg01no461_p01.g1)
ACCAG546944AG546945
length1,084769
length of high quality
(start - end)
---331 (79 - 409)
definitionCHROMAT_FILE: MSMg01no461_p01.b1 PHD_FILE: MSMg01no461_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:44 2005CHROMAT_FILE: MSMg01no461_p01.g1 PHD_FILE: MSMg01no461_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATCCCTTACAAACTCGGCGCTCCGCTTAAAAATGAATTAATACTATT
TCCCACAAAAGAAGCGCGANGNGAATACCNCTTTCTTTTCTCCTACACGA
CGGACCCACTATCTTTNTAATTGCGGCGGTCTGCATCCATATTACTCTTG
CCCTGTTCTATACCATATGATCTTCACAATAACACATACTTTACTGACCG
CCATACACCCAACAATGAACAACCAATTCGCATCGTCTTCTTGCACATAC
AACAAACTGCTCCCCATCATATGTTATCACTTATTAGTACATGTTACCAC
CTCCCCCCACTCTCGCTTCACATAACGACTCTTCCACTACTCCTTCGCAC
ATTATTCTCATCTACTATAATCTAACACCCCACGCATTATCCCATTCCCA
CTCCTGCATATTGATTGCCCCCTCCCCCTTGCCGCACCTCTGCCCCTCCT
CTTTTGTTTCTCCTTCTTGCTTTTTTTACTTCCCGCCACTACCCTACATC
TCTCTTCTTACCACCGCTCTTCACCACCACCCCTATCCCCCCCCCCACAT
TTCTACCCCCTTTTTCTTCTCTTTTTTATTTGTGCCCTTGTCTTCCCTCT
CCCCCTGTTTTACCTTTCTTTGCCTCCGCTATCTCCTTTCGCCTTTATAC
CCTTCTCGTTACTCCACAACTGCTCTCTTTTCATCACTATCACTCTCGTT
CACCTCATTCTTTCCTCCTCTCCCCACCTTACTCTCCTCTTCTCTCCCCT
TTGTACATTTTCTCTTTTCCCCCTTTTCTCCTCTTCTTCCTGCCACACCT
GATCGTTACATCTCTCCCACACTATATACAATTAAATCATACTCTTATCC
ACCCCCTCCCTCGCCAACATCCTACACTCCACTTACTATTTTCACGTACT
ATTTACACAATCTTATTCATTCCCACTACCTCACCAATTCTTTACACACA
CTTCACTTCCCAAGTCAACCTATCTCCTCTATTCACCCTCTTCTCACCAT
ATTCTCTTTCACACTGACTACTTCGTATTCCTTACTTCTCTTCCTCACTC
TCTCTTCTTATCTTCCCCTGTCNCTCCCCTATTN
GGTGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGTTTTTTAAAGTGTAGTT
CATACATTCATATATTCACACATCCATGCATTCCATATGTTTGAATAAAG
TTTTAAATAGAAGATAGTGGCTTAATGTTAATAATTGTTTTACTTATTTA
TTATTTATTTATTTATTCTTTAATCTTTTACAATCCAGACTTTATCCCCC
TCCTGGTCCACCCTCTGATTGTTCCACATCCCATACCTCCTCTTGAGATG
TATCCCAAGTTGGGCCTGTCACTTGCCCTCATTTTACTCAGGCTCATCTC
CATTCTTGTCCCTGTAGTTCTTGCAGACAGGAACAATTATGTCAGAGCTT
TTGACTGTGGAATGGCATCCACATCCCTCGACTTGATGTCCTGTCTTTTC
TACTGAAGGTGGTCTCTACATGCTCTTTCTCCCCACTGTATGGTATCTCA
TCTAAAGTCCCCCCTTTTTGAGTCCTGATATTTTCTCACCTCCTACTTTT
TTTGTTACGCTCCCCAGGCTTCCTCCTCCCCCCTATTCTTGATTTCGTCT
TGCTTCTACTTTTTTTCTCCTGTTTCCTTGAACTTTTTTTTTTTCCTTGT
CCCCACCCTTCTTTTTTCTTTCTTCCCTCGCTCCCTTTACCCCTTCTCCT
TCCTTTGCCTTTTCCCTTTTTCCTCCCTCTTTTGTCTTTTCTCCCTCCCC
CCTTTCTCTTTTCCTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p01.g1 MSMg01no461_p01.g1 CHROMAT_FILE:
MSMg01no461_p01.g1 PHD_FILE: MSMg01no461_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:44 2005
         (331 letters)



>mm_chr12_45045190_45045920
          Length = 731

 Score =  542 bits (280), Expect = e-158
 Identities = 319/332 (96%), Gaps = 2/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggttttttaaagtgtagttcatacattcatatattcacacatccatgcattccatat 60
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggtttgttaaagtgtaattcatacattcatatattcacacatccatgcattccatat 260

                                                                       
Query: 61  gtttgaataaagttttaaatagaagatagtggcttaatgttaataa-ttgttttacttat 119
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 261 gtttgaataaagttttaaatagaagatagtggcttaatgtta-taaattgttttacttat 319

                                                                       
Query: 120 ttattatttatttatttattctttaatcttttacaatccagactttatccccctcctggt 179
           ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 320 ttattatttatttttttattctttaatcttttacagtccagactttatacccctcctggt 379

                                                                       
Query: 180 ccaccctctgattgttccacatcccatacctcctcttgagatgtatcccaagttgggcct 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 ccaccctctgattgttccacatcccatacctcctcttgagatggatcccaagttgggcct 439

                                                                       
Query: 240 gtcacttgccctcattttactcaggctcatctccattcttgtccctgtagttcttgcaga 299
           |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 440 gtcactggccctcattttactcaggctcctctccattcttgtccctatagttcttgcaaa 499

                                           
Query: 300 caggaacaattatgtcagagcttttgactgtg 331
           ||||| ||||||||||||||||||||||||||
Sbjct: 500 caggagcaattatgtcagagcttttgactgtg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)