Query= MSMg01no462_a06.b1 MSMg01no462_a06.b1 CHROMAT_FILE:
MSMg01no462_a06.b1 PHD_FILE: MSMg01no462_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:51 2005
(562 letters)
>mm_chr12_110357469_110358430
Length = 962
Score = 414 bits (214), Expect = e-120
Identities = 220/222 (99%)
Strand = Plus / Minus
Query: 341 ggatacttactccatggtggacagaaagcagagagaggcacagagggcccaaggaccagt 400
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 882 ggatacttactccatggtggacagaaagcagagagaggcacagagggcccagggaccagt 823
Query: 401 aataacatttacaataatttcccctagtgacttgccttgttcagctaggctccacctcct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aataacatttacaataatttcccctagtgacttgccttgttcagctaggctccacctcct 763
Query: 461 ccacctctcaaagtgtctgaaactaaagatctccagatgagtctgtgaagagtatctaat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ccacctctcaaagtgtctgaaactaaagatctccagatgagtctgtgaagagtatctaat 703
Query: 521 atttaatccatctaatatttaatccgaaacattcctctctgt 562
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 702 atttaatccatctaatatttaatctgaaacattcctctctgt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_a06.g1 MSMg01no462_a06.g1 CHROMAT_FILE:
MSMg01no462_a06.g1 PHD_FILE: MSMg01no462_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:51 2005
(442 letters)
>mm_chr12_110190083_110190924
Length = 842
Score = 810 bits (419), Expect = 0.0
Identities = 435/442 (98%), Gaps = 4/442 (0%)
Strand = Plus / Plus
Query: 1 agaagagctttataatattgtcgcttaataagaaaatgcacccattggcagggcttggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagctttataatattgtcgcttaataagaaaatgcacccattggcagggcttggga 260
Query: 61 tttatagcttcaaatggatttcagcttggagttttagccctctgtgttcctgctcttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatagcttcaaatggatttcagcttggagttttagccctctgtgttcctgctcttccc 320
Query: 121 agggctatgagaacggttttttaattaagtcaaattgaattgaatgagcttttattgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggctatgagaacggttttttaattaagtcaaattgaattgaatgagcttttattgaac 380
Query: 181 accccctctgtgctagacaccagctccttaacccttgcactgccccatagctatagggag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 accccctctgtgctagacaccagctccttaacccttgcactgccccatagctatggggag 440
Query: 241 ctgagccagcctagggcctgcaggtttagcccccatatccaccatcttccaactggatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagccagcctagggcctgcaggtttagcccccatatccaccatcttccaactggatgg 500
Query: 301 tctgctctggagggtggggttggcagtgggtctggntcattctctctctctctctctctc 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tctgctctggagggtggggttggcagtgggtctggttcattctctctctctctctctctc 560
Query: 361 tctctctctgtctctctctgtctctttctctctctctctctgtgagatctgcctgcctct 420
|| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tccctctct--ctctctctgtctctttctctctctctct--gtgagatctgcctgcctct 616
Query: 421 gcctcccgagtgctgggatgtg 442
||||||||||||||||||||||
Sbjct: 617 gcctcccgagtgctgggatgtg 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
