BAC Information

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BAC

Clone NameMSMg01-462A19
Chromosome12 (Build37)
Map Location 14,340,494 - 14,341,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462A19.T7 (MSMg01no462_a19.b1)MSMg01-462A19.TJ (MSMg01no462_a19.g1)
ACCAG547028AG547029
length7801,066
length of high quality
(start - end)		506 (52 - 557)---
definitionCHROMAT_FILE: MSMg01no462_a19.b1 PHD_FILE: MSMg01no462_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:54 2005CHROMAT_FILE: MSMg01no462_a19.g1 PHD_FILE: MSMg01no462_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGCTTCTTGTATTATTGCAAAAATGGGTTCTCAAGAA
GATCAAGAATGGATGAAACTTTCGGATTCATTACTAAGAAAGCAGTAGTT
CTCCACCTGTGGCATAGGACCCCCTTGGAGTTGCATATTAGGTATTTACA
CCATGATTCACAATAGTAGCAAAACTACAGTTATGAAGTAGCAATGAAAT
ACTTTTATGGTTGGGGTTTTCCACAGGTAGTAAAGGGACACAGAATTATG
AAATTTGAAAAGCACTAAAGTAGGGTCTTTAAAGCCCTGTAAATTGAAGA
GATGTTATGAACAGTAACCCCAGTAGCAACATTGAGAAACTTCCACTTAC
TTGGAAGGTAACAAGCAGAGTTAGTATTTGAAGGTAAGGGGAAGAAGGTG
GGATCAGAGAAGCTAAAAAGTGGGAGTATTTCAAGAAATTTCAAGGCCTC
TGAAAGATTGAGATGAAGGTATATTTCATAATATTAATTAACAAAGAGGA
ATTTCATTTGGGTATCATTGGGGAGAATAATGGNCAGGCANGTCAGTGAT
CTAAAAGGGAAAATTATGGGAAGAAAAAAAATGTANGTAAATTCAAAAAC
TTAAATATGGACCATAAGGAACCTCAAGGAAAACTATGTTTTATGGGAAG
CCCCTTGTTTGGGTTTCTTTCTCAAAAAGGAACAACCACGGGAAATTTGT
AAAAATTTGTCCCATAAGTTGGAACCCTTA

TGGTTACCAGTGACAACTATAACTCTTCCTACTTCTTTCTTCCCCTCCTC
TTATTTGTGCTCGTTCTTTTCTCCCTCCTCCTCTCCTTCTCCTCCTTTCT
ATCCCTCTCATATTTTTATCCATCTTTTATACTACCATACCACGCTTATC
CCCCCACTTCTCATACTCCTATCTCCGTGTCTCCTCTATCTCCCTCAGTG
CATCGCCCCTCGTTTATCTGTCTTATTTTCTACTGTCCTCCTCTTCCACC
CTTCTCTGCATATCTTCTTGCTTCACCTTATTCATCTCTTCCCTCTCTTC
CCCTGTTCTATTCGCTGTACAAGTTTTTAATCCTAAGCAACATCTCACTC
CCGACTAGACGTACCGACAACGACGCATATCATCCAACTTCCCTGCCACC
TCTGCCCTGATTCATACCTACTTTCGAATATATCTTAGACACGTTTAGAA
CAGAGGAGCTCGTACGTTCTATATTGCATTATATTAATAACTGTCGCATC
CACTCTAATTCAATATATACTCTACACGCACCTACGAACCAACGCCTGAC
ACGACCGACGTTTGTATCTACAGAGAGAGCACCATCTACATAACATATTT
AATCAGATAGAGGACTACTTGCCTGTCGCTATAAATGAGTTATTATCACG
CTTACCTCGAAGGTCCATCAAACAGAGAGCATATGGCTCCTACATATCCT
ATCCATGTCTCATCCATCTTTATATACATCCAGATAGTTGCGTAAATGTC
TATGTTCTAAGCAAACACGTTCATTATATGGCATATACAATCCGTCCGCG
CTACATTCGGCTCAACCTTATTTGTGACTGCAAGATAGTGTCTAACACGT
ACAGGACATCTGATGCTATTTATTATAGCTCAGTAGCACCTAGAGATATC
CTATCGGACAGTCACTCTATCGCAGCGGCACTATTAGACACACGTAGAGG
AAGAATACTCTATCATGTAGATCCCTACGAATTCGATTTTATGACGTTAC
AGCCATAACATAGAGTCAGTACATATCATCTAAGACGAATCTATATGATG
AGACAGGATAATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_a19.b1 MSMg01no462_a19.b1 CHROMAT_FILE:
MSMg01no462_a19.b1 PHD_FILE: MSMg01no462_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:54 2005
         (506 letters)



>mm_chr12_14340301_14341206
          Length = 906

 Score =  857 bits (443), Expect = 0.0
 Identities = 492/515 (95%), Gaps = 14/515 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgcttcttgtattattgcaaaaatgggttctcaagaagatcaagaatggat 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 194 ggaattcactgcttcttgtattattgcaaaaatgggttctcaggaagatcaagaatggat 253

                                                                       
Query: 64  gaaactttcggattcattactaagaaagcagtagttctccacctgtggcataggaccccc 123
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 254 gaaacttttggattcattactaagaaaacagtagttctccacctgtggcataggaccccc 313

                                                                       
Query: 124 ttggagttgcatattaggtatttacaccatgattcacaatagtagcaaaactacagttat 183
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tt-gagttgcatatcaggtatttacaccatgattcacaatagtagcaaaactacagttat 372

                                                                       
Query: 184 gaagtagcaatgaaatacttttatggttggggttttccacag-----------gtagtaa 232
           ||||||||||||||||||||||||||||||||||||||||||           |||||||
Sbjct: 373 gaagtagcaatgaaatacttttatggttggggttttccacagcataaagaactgtagtaa 432

                                                                       
Query: 233 agggacacagaattatgaaatttgaaaagcactaaagtagggtctttaaagccctgtaaa 292
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agggacacagaattctgaaatttgaaaagcactaaagtagggtctttaaagccctgtaaa 492

                                                                       
Query: 293 ttgaa-gagatgttatgaacagtaaccccagtagcaacattgagaaacttccacttactt 351
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tt-aatgagatgttatgaacagtaaccccagtagcaacattgagaaacttccacttactt 551

                                                                       
Query: 352 ggaaggtaacaagcagagttagtatttgaaggtaaggggaagaaggtgggatcagagaag 411
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 552 ggaaggtaacaagcaaagttagtatttgaaggtaaggtgaagaaggtgggatcagagaag 611

                                                                       
Query: 412 ctaaaaagtgggagtatttcaagaaatttcaaggcctctgaaagattgagatgaaggtat 471
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 612 ctaaaaagtgggagtatttcaagaaatttcaagtcctctgaaagattgagatgaaggtat 671

                                              
Query: 472 atttcataatattaattaacaaagaggaatttcat 506
           ||||||||||| |||||||||||||||||||||||
Sbjct: 672 atttcataatactaattaacaaagaggaatttcat 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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