BAC Information

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BAC

Clone NameMSMg01-463F22
Chromosome12 (Build37)
Map Location 58,530,966 - 58,531,282
singlet/doubletsinglet
Overlap genenone
Upstream geneE030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463F22.T7 (MSMg01no463_f22.b1)MSMg01-463F22.TJ (MSMg01no463_f22.g1)
ACCAG548038AG548039
length745763
length of high quality
(start - end)		667 (73 - 739)475 (82 - 556)
definitionCHROMAT_FILE: MSMg01no463_f22.b1 PHD_FILE: MSMg01no463_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:45 2005CHROMAT_FILE: MSMg01no463_f22.g1 PHD_FILE: MSMg01no463_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCCG
CGGAATTCATTAGGATTTCTCCATGTGATAGTGTCGTATGTGGACACTAG
AAGTTTTGCTCATTTTCCAACAAGAAAAAGTTTAATGTACTTTTTGTTCC
TCACATGCCCTGACTGTGACCTCTACTATATAAGGAGCAAGGGTGGAAAC
ACTTGTCACCCAGTGTGACTGTAATAGGAAAACACCCAAGGCTTTTCTCA
CCGAGTGTGATGGTAACTAGTTTTTCATAAATGTTTCTCCCCACCCAGGT
TTAGAAGGTCACACTTAAGCCTCATCTTCTCAGCGTTTTTTTTTTAAAGA
TTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGATACACCA
GCAGAAGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTT
GCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACC
CACTGAGCCATCTCACCAGCCCCAGTGGTTTTTTTTAAAAGCATAGTCTA
TCAAGTCCTTTTTCTCCATCTACTCAGATGGTCACATAAGTTTTACTCTT
TGTTCTTTTTATATTATATATTTGGTTACATTTGTATTTCCTATTATACC
TTAAACGTAAGTATTGTTTAGATAAAAAATTGCAAAATATATTCTTTGCA
AAAATAGTTATATTTTACTTATCTTTCTTTTAAATGTCGATTTCT

NNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGATTTACTTTTTGGT
GTTTGTTATGTCCTTTTTATATTTAGTTTTTTAAAATTTAGATTTTCCCA
TTTTGCCTTTTAGTTAATTTGAATAAGCATAGTTGTATCTTACTGTTTTT
TTTTAAAGAACCAATTCTTTTTTCATTGATTTTCTTTTTGCATTTTTTCT
ATTTATTGATTTCAACTCTAAGTTTGAACTCTTTTGGGGTTTGATTTTTG
TTTTTTTTTCTTTTTAATTCTAGAACTTTTCCGTGTGCTACTAGGTTAGT
AGTATGAGATCTTTCCAGTTTTTTTTTTTTAATGTAGGCACTTGGTGCTA
TGAACTTGCTTCTTACATACATTTGTATATATTGTGTATTTATTTTCATT
CAATTTAAGAAAGTCCTAAGTTTTTAACTTAATTTTTGTCTTGACCCATT
TTTCATTCAGTGGTGAGTTTTTCAGTTCCCATGAATTTATAAGCTTTTTC
TTGTTTTTGTTCTTGGTGATATCCAGCTTGGTAGATACTCATGATAGTCC
AGGTGTTACTTGTATCTGTTGAGAATTGCTTTACATCCACGGTATGTGGG
CTTTTGAAGAAACTCCTGGGAGTTTTGGAAAAGAGGGATATTCTTTTGGG
TTGGGGGAAAAATTTTGCAAAGTAAGTTTGGACAATTTTTAAAGCGTGGA
ACCCCCCGGGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_f22.b1 MSMg01no463_f22.b1 CHROMAT_FILE:
MSMg01no463_f22.b1 PHD_FILE: MSMg01no463_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:45 2005
         (667 letters)



>mm_chr12_58530216_58531282
          Length = 1067

 Score =  565 bits (292), Expect = e-165
 Identities = 312/320 (97%), Gaps = 4/320 (1%)
 Strand = Plus / Minus

                                                                        
Query: 348  gttacggatggttgtgagccaccatgtggttgctgggatttgaactctggaccttcggaa 407
            |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1067 gttacggatggttgtgagtcaccatgtggttgctgggatttgaactctggaacttcggaa 1008

                                                                        
Query: 408  gagcagtcgggtgctcttacccactgagccatctcaccagccccagtggttttttttaaa 467
            |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 1007 gagcagtcgggtgctcttacccactgagccatctcaccagccccagtgg---tttttaaa 951

                                                                        
Query: 468  agcat-agtctatcaagtcctttttctccatctactcagatggtcacataagttttactc 526
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 950  agcataagtctatcaagtcctttttctccatctactcagatggtcacatgagttttactc 891

                                                                        
Query: 527  tttgttctttttatattatatatttggttacatttgtatttcctattataccttaaacgt 586
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 890  tttgttctttttatattatatatttggttacatttgtatttcctattataccttaaacat 831

                                                                        
Query: 587  aagtattgtttagataaaaaattgcaaaatatattctttgcaaaaatagttatattttac 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  aagtattgtttagataaaaaattgcaaaatatattctttgcaaaaatagttatattttac 771

                                
Query: 647  ttatctttcttttaaatgtc 666
            ||||||||||||||||||||
Sbjct: 770  ttatctttcttttaaatgtc 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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