BAC Information

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BAC

Clone NameMSMg01-463O24
Chromosome12 (Build37)
Map Location 12,499,144 - 12,499,514
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O24.T7 (MSMg01no463_o24.b1)MSMg01-463O24.TJ (MSMg01no463_o24.g1)
ACCAG548472AG548473
length1,211749
length of high quality
(start - end)		---371 (85 - 455)
definitionCHROMAT_FILE: MSMg01no463_o24.b1 PHD_FILE: MSMg01no463_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:32 2005CHROMAT_FILE: MSMg01no463_o24.g1 PHD_FILE: MSMg01no463_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTCTTCCACTCCTACCCCTAACACACCGCACCACACACCACGACCCAA
GCAGCGGGCTCTGTCCCCAAAAAAACCACGGCNGGNGCNNNNNNNNNNNN
NGGGGGTTCACCAAAAAAAGAAAGAGGGGGGGGNGGNGGGGNNNGGGGGG
GGGGGNAAGGGNNGNNGGGNGGAGGGGGAGGGAGANAGNATTGTTGAGAG
GAGAAGGAGAGAAANAGAAGAAAGGGAGNGAGAGGAGGNGGGAAAGAGGG
AGAAAGAGGAGAAGAAAGAAAAAAGAGAGAGGAGAGGAGAGGAAGAAAGA
GGAAGAAAAAGAAGGAGAGGAAGAAGAGAGAGATAGGGAGGGAGAGAANA
GGGGGAAAGGAGGAAGAGGAAGAGAATGAGAAGAGGAGAAAGAAGATAGA
GAGGGAGGAGATAGAAATAGGATAGAAGAGAAGAGGAGNGATGGTTAAAA
GAAGAAAAGGAGAAAGAGAGAGAGAANGAAAAGGAGAGTAGAAGTGAGGA
AGGGGAGAGTAANGAGAGGGAGGAGGAGAAGAGAAAAGAGGAAGATGTGT
TATAGATGATGGAGAGAGAGGAGGAGAGGAGAAAAGAAGGAGAAAGAGAA
AGAAGAGAAAGATAGAAGAGATAAAGGAATGAGATAAAGACAAAAGAATG
AGAGGACGCGAAGAAAAGATACACAACCACAAGAACACAGAAAACCACAA
AGTCCAGCACACACCACCAACGCACCGACACAAACATGACACAAGAAAGA
CGATAAACGCAACCCACATACACCACCGACAAAACACGCCATGACACCGC
CACCTACCAATCAACCCAACACAAACCCCTCCTCCACAAAGCGCGCAACC
ACACGAACACCACAACAATACTCACAACTCAAACACCACCACAAGCCCCC
CACACGCATATGCGCACCCGAAGACGACCACCCGTCGATCCACATCACCA
CAGCCCACGATACACCGCCACACACGCAAGCATACGACGCAAAATACCCC
ACACACACCAACACCAACAAAACGAGTAAGATATAATAAAACCCGACCCC
GAGTGTACGCGCCACACGCAACCGCCAACCACCACCACAAAGGACGCACC
CCCGCATCCACTCACACTCTCTACCTCACCACCACCGACACTNTCAACCT
CGCATCCTCCCCTNCACAAATCCAGAACAAGATATCACTCACCACAAAAC
ACTATCACAAA

CCCAATGCCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGACTCTTACTGT
AAGTTCCTCAAGGGCTAAGGAAATGACTCAATGGTTAAAGCACTTGCCAC
GTAATATGAAAACCTGAGTTTGGATCCCAGAAATCATTATAAGTGTCAGG
TAGGTGTAGCTGCCCAACTGTAATTCCAGCCCCAGAAAATGGAGACTTTG
AGAGCAACCATATCAACAAGCTCTGAATTTGATTGAGATACCCTGCCTCA
ATGAATAAGGTTGGGGAAGAATGAAAGATTATTCCTAACAACAACCAAAA
ATGTACATGCATACCCCCACATATGTGCAACCACCCACATGCAAAATCAT
GCACATAGTGCACTCACACGAGTGGGGGGAGAGGGAAAGGGAGAGGGGAG
AGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNN
NNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTNNNNNNNNNNNNNTTTNNTNTTTTTNNTTTTTTTTTTTTT
NTTTTTTNNTTTTTNTTNNTTTTTTTTTTNNTTNTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o24.g1 MSMg01no463_o24.g1 CHROMAT_FILE:
MSMg01no463_o24.g1 PHD_FILE: MSMg01no463_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:32 2005
         (371 letters)



>mm_chr12_12498944_12499716
          Length = 773

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/371 (98%), Gaps = 2/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagactcttactgtaagttcctcaagggctaaggaaatgactcaatggttaaagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagactcttactgtaagttcctcaagggctaaggaaatgactcaatggttaaagcact 260

                                                                       
Query: 61  tgccacgtaatatgaaaacctgagtttggatcccagaaatcattataagtgtcaggtagg 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccacgtaagatgaaaacctgagtttggatcccagaaatcattataagtgtcaggtagg 320

                                                                       
Query: 121 tgtagctgcccaactgtaattccagccccagaaaatggagactttgagagcaaccatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagctgcccaactgtaattccagccccagaaaatggagactttgagagcaaccatatc 380

                                                                       
Query: 181 aacaagctctgaatttgattgagataccctgcctcaatgaataaggttggggaagaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaagctctgaatttgattgagataccctgcctcaatgaataaggttggggaagaatga 440

                                                                       
Query: 241 aagattattcctaacaacaaccaaaaatgtacatgcatacccccacatatgtgcaaccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagattattcctaacaacaaccaaaaatgtacatgcatacccccacatatgtgcaaccac 500

                                                                       
Query: 301 ccacatgcaaaatcatgcacatagtgcactcacacgagtggggggagagggaa-aggg-a 358
           | ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |
Sbjct: 501 ctacatgcaaaatcatgcacatagtgcactcacacgagtggggagagaggggagagggga 560

                      
Query: 359 gaggggagagg 369
           |||||||||||
Sbjct: 561 gaggggagagg 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 773
Length adjustment: 9
Effective length of query: 362
Effective length of database: 764
Effective search space:   276568
Effective search space used:   276568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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