BAC Information

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BAC

Clone NameMSMg01-464A15
Chromosome12 (Build37)
Map Location 85,707,179 - 85,904,875
singlet/doubletdoublet
Overlap geneCoq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464A15.T7 (MSMg01no464_a15.b1)MSMg01-464A15.TJ (MSMg01no464_a15.g1)
ACCAG548550AG548551
length744745
length of high quality
(start - end)
241 (72 - 312)455 (79 - 533)
definitionCHROMAT_FILE: MSMg01no464_a15.b1 PHD_FILE: MSMg01no464_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:40 2005CHROMAT_FILE: MSMg01no464_a15.g1 PHD_FILE: MSMg01no464_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,707,179 - 85,707,419)(85,904,550 - 85,904,875)
sequence
GAATCTATXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAATAGGATCCGC
GGAATTCTACTTGCCGAAGAACATTTTTCCATTATTTGAGTCTTTGTGTG
TGGTGTGCAGTGCGTTCTGTCTGGGGAAGCCTTACAGTTGTGTAGAGTGG
CTGTCTCAGGTCAAATGGCAGGATGGTGTTAGTGCTCAGGATAGTGTGTG
TCTAGGGAGTTGGATGATTAGTTTTGCAGTACTGAGCTTGAACTATTACC
TCACACTTGGTAGGCACGGCACCTCGGACCTATGTCCCAGCCTAGAAATT
TCCTTTCCAAGGTTTTCTTTTCAGTTGGCTTTCTGTTTTACTTTTTGTTG
CTGCCTTGTCTTTTGCTTGCTTTCGAGATACGCTCTCATTCTGTAGCCTT
GGCTGATTGAAATCATAGCCATCCTGCCTTAGCCTCCAGATGTGAACCCC
TGGATCTGGTTTATATTTGCTTCTGATTGAATACTTAATACATAAAATTA
TACATATTAATGATGTACCTTGCAATACTTCGATTCATGCCTACATTGCT
TAACTTTAAATCCGCTTCAACATTTATGCTCTTAATTTTTTTCCCCCTTG
CACACTTTTTCTTTCTTGCCTTTCCTCCGTATAGTTTATTCTTTACCATA
TGGTTTCCCCCTTTACCTGTACCCCTAAACTCCCTTACCCCTTTGTAACC
TTTATTTTACTAACGTTAACCCCTTTTTCCTTCCTTTACCTACT
CCTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGACTAAACCACGTAGGA
AGACCCTGCTGGACTGGGGATGCGGCCAGAGCATAGATCTAGCTCTTGCC
CTCATCAAAACTGAGCCCACGATGGAAGGGGGTGGTATTCTTTAAAATTA
AAAATATATACATGAGGGTTTGCCTGCATGTATGTGTGTGTGTGTCTCAT
ATAGGCTTGGTGCCTGAAGAAGTTAGAAGAGGGTGTTGGATCTCCTGGAA
CTGGAGTTACAGACAGTTGTGAGCTGCCATGTAGGTGCTGGGGACAAAAT
GTGGACCCCTCCAGAAGGCAGCAAGTGCTTCTAACTGCAGAGCCATCTCT
CCTGCCCCAGAGTGGGAAGTCTTAAAACAGTTAGCATGGGACCTGGTTTG
GGGGCTCAATTCATTACAGCCCTTCCTGCTATCATTCACGGCTGCCAAAC
CTCTTAACACAGTTACTCCACTGAAGTCGGCTGAGAGTTCAAGAGGTCTG
TCCCGCTTGCTACAAAGAAAACACCATAACCTCGGCTGCTAGGAGCTGGG
TGGTGTGTGAGGAAATGATCTTACTTTTCCCTTTTCTTCCCTCTCTTCAT
TTCTTCTTTCCCCATCCCTTATTAGCTTCCCCTTTCTCTCCCCCTATTCC
CCCTTTCCTTTTCCCCCACTCCTTACCTTTTATTATTAATTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_a15.b1 MSMg01no464_a15.b1 CHROMAT_FILE:
MSMg01no464_a15.b1 PHD_FILE: MSMg01no464_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:40 2005
         (241 letters)



>mm_chr12_85706979_85707619
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttttccattatttgagtctttgtgtgtggtgtgcagtgcgttctgtctggggaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttttccattatttgagtctttgtgtgtggtgtgcagtgcgttctgtctggggaagcc 260

                                                                       
Query: 61  ttacagttgtgtagagtggctgtctcaggtcaaatggcaggatggtgttagtgctcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacagttgtgtagagtggctgtctcaggtcaaatggcaggatggtgttagtgctcagga 320

                                                                       
Query: 121 tagtgtgtgtctagggagttggatgattagttttgcagtactgagcttgaactattacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 tagtgtgtgtctagggagttggatgattagttttgcagtactgagcttgaactagaacct 380

                                                                       
Query: 181 cacacttggtaggcacggcacctcggacctatgtcccagcctagaaatttcctttccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacttggtaggcacggcacctcggacctatgtcccagcctagaaatttcctttccaag 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_a15.g1 MSMg01no464_a15.g1 CHROMAT_FILE:
MSMg01no464_a15.g1 PHD_FILE: MSMg01no464_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:40 2005
         (455 letters)



>mm_chr12_85904550_85905404
          Length = 855

 Score =  600 bits (310), Expect = e-176
 Identities = 322/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggactaaaccacgtaggaagaccctgctggactggggatgcggccagagcatagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 accaggactaaaccacgtaggaagaccctgctggactggggatgcggccagagcatagat 267

                                                                       
Query: 61  ctagctcttgccctcatcaaaactgagcccacgatggaagggggtggtattctttaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctagctcttgccctcatcaaaactgagcccacgatggaagggggtggtattctttaaaat 207

                                                                       
Query: 121 taaaaatatatacatgagggtttgcctgcatgtatgtgtgtgtgtgtctcatataggctt 180
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taaaaatatgtacatgagggcttgcctgcatgtatgtgtgtgtgtgtctcatataggctt 147

                                                                       
Query: 181 ggtgcctgaagaagttagaagagggtgttggatctcctggaactggagttacagacagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggtgcctgaagaagttagaagagggtgttggatctcctggaactggagttacagacagtt 87

                                                                       
Query: 241 gtgagctgccatgtaggtgctggggacaaaatgtggacccctccagaaggcagcaagtgc 300
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 86  gtgagctgccatgtgggtgctggggacaaattgtggacccctccagaaggcagcaagtgc 27

                                     
Query: 301 ttctaactgcagagccatctctcctg 326
           ||||||||||||||||||||||||||
Sbjct: 26  ttctaactgcagagccatctctcctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)