BAC Information

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BAC

Clone NameMSMg01-465B16
Chromosome12 (Build37)
Map Location 4,011,936 - 4,012,370
singlet/doubletsinglet
Overlap geneC030014M07Rik
Upstream geneLOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1
Downstream geneC330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465B16.T7 (MSMg01no465_b16.b1)MSMg01-465B16.TJ (MSMg01no465_b16.g1)
ACCAG549363AG549364
length784782
length of high quality
(start - end)		407 (35 - 441)435 (65 - 499)
definitionCHROMAT_FILE: MSMg01no465_b16.b1 PHD_FILE: MSMg01no465_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:05 2005CHROMAT_FILE: MSMg01no465_b16.g1 PHD_FILE: MSMg01no465_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGTTC
TCTGCTGCATAGCAAGTTTGAGGGCAGTCTGGGCTGTGTTAGACCCTCTC
AGAAAACAAAGGTACAACAGAACAGGTATAAGGGTAGTTCGGTTAGCGGG
GTTCTTGGTACACACAAGGCCTTGAGTTTCATGTCTGTCACCACAGAAAC
CCAGCACGTAGGGCATACTGGTCAACTCCAGCTCGTGGGAGGTGGAGGCA
GGAGGATCGGGAGTTCAAGGATGACTATTTCCCCTGAAGATCAATTGATC
AGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCACACACAATGTGTGTGCAC
CCTGTGTGTGCCAGCCATCTGTGGAGGTCTGAAGAGGATGCCATCTCCTG
GAGCTAGAGTTACTGGCTGTTTTGAGGCACCTGGTGTGGGCGCTGGGAAT
CAGGCTCCCCTGGAAGAGGATCAAGCACTCTTATCCACTGAGCCAATTCT
CCAGTCCCAAGGATAAATGGTTTTATGCTGGCGTTACTAATATATATCCC
GTTCTCTAGGGTCTTTATCAAATTTTTTTTGAGTACAAATCTGTTTGGGG
GTACGGCTAGGCTTCTGTTAACCGCCCCTTTCCTTATTTTCTCCCCCTTC
CCCCCTTGGTGTGGTTTTCCTCGTCCTTATATTGTTTAGGTGATCTCTGT
GGAGTTTCCCTCTACCCCACTTTTTTTTGTTCCTGCAGTATCTCCTTTTT
CATCTCCCTCTTCCCCCCCGCCATTCCTTTCTTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCTCTTAAGAAACGTTCAAGCCGGACATGGTGGCA
CACGCCTTTAATCCCAGTACTCGGGAGACAGAGACAGGTGGATTTCCGAG
TTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTAT
ACAGAGAAACCCTGTCTCGAAAAACAAAAAAGAAAAAAGAAAGAAATGTT
CAAAATTACTCTACCCCGACACTTTACCACCCCAGCTCCAGTCTCCTCAG
CAACCCCGTGTGTGTGTGCGCAACATTTAATGTGTATGAACCTATGTGTT
TCATACTCCTTCTGAATATATTCATATTTCTATTTTTTACCTAGCAACAA
TATGAGGTATTTGCAAGAGAGACCTCAAATCTTTCATTTCTACAAGTCAG
CATATTGGAGGAGAGCCCGGCTTTGCCACCATCTGGAATACAAAGATAAT
TTTACCAACTTCAGAAACTGTAAAGATTCACTGAAAGAAGGCAGAGTGTC
CCGCACAGACGAGTTCCGAACACGCCTGCAGTGGTTGTTGGGCACGGTCA
CCCCCCCCCCCTGGGGTTTCTCCACAGAGATTTGCCCTTGACTATCTGAA
AGGGGGGGGGGGGCGTCTTGTGCCTGGATAAAATTTTTTCACCCCCATAG
TTGGCTTTCCTAATGGTTGGGGGGGTTTTTCTTTTCCGCGCCCCCTTTTA
ATCCCTTTCCAAACACAATTCCTTTCATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_b16.g1 MSMg01no465_b16.g1 CHROMAT_FILE:
MSMg01no465_b16.g1 PHD_FILE: MSMg01no465_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:05 2005
         (435 letters)



>mm_chr12_4011571_4012405
          Length = 835

 Score =  833 bits (431), Expect = 0.0
 Identities = 434/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcttaagaaacgttcaagccggacatggtggcacacgcctttaatcccagtactcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttctcttaagaaacgttcaagccggacatggtggcacacgcctttaatcccagtactcgg 741

                                                                       
Query: 61  gagacagagacaggtggatttccgagttcaaggccagcctggtctacagagtgagttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gagacagagacaggtggatttccgagttcaaggccagcctggtctacagagtgagttcca 681

                                                                       
Query: 121 ggacagccaaggctatacagagaaaccctgtctcgaaaaacaaaaaagaaaaaagaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggacagccaaggctatacagagaaaccctgtctcgaaaaacaaaaaagaaaaaagaaaga 621

                                                                       
Query: 181 aatgttcaaaattactctaccccgacactttaccaccccagctccagtctcctcagcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatgttcaaaattactctaccccgacactttaccaccccagctccagtctcctcagcaac 561

                                                                       
Query: 241 cccgtgtgtgtgtgcgcaacatttaatgtgtatgaacctatgtgtttcatactccttctg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccgtgtgtgtgcgcgcaacatttaatgtgtatgaacctatgtgtttcatactccttctg 501

                                                                       
Query: 301 aatatattcatatttctattttttacctagcaacaatatgaggtatttgcaagagagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatatattcatatttctattttttacctagcaacaatatgaggtatttgcaagagagacc 441

                                                                       
Query: 361 tcaaatctttcatttctacaagtcagcatattggaggagagcccggctttgccaccatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaaatctttcatttctacaagtcagcatattggaggagagcccggctttgccaccatct 381

                          
Query: 421 ggaatacaaagataa 435
           |||||||||||||||
Sbjct: 380 ggaatacaaagataa 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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