Query= MSMg01no465_d05.b1 MSMg01no465_d05.b1 CHROMAT_FILE:
MSMg01no465_d05.b1 PHD_FILE: MSMg01no465_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:13 2005
(327 letters)
>mm_chr12_91010460_91011187
Length = 728
Score = 611 bits (316), Expect = e-179
Identities = 326/330 (98%), Gaps = 3/330 (0%)
Strand = Plus / Plus
Query: 1 aaacctaaaatgtcaattttctaaattagtttcaaatttatatctcacacacacatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaacctaaaatgtcaattttctaaattagtttcaaatttatatctcacacacacatacac 258
Query: 61 acacacacacacacacacacacacacacacacacaca--tatatacagagagagaggggg 118
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 259 acacacacacacacacacacacacacacacacacacacatatatacagagagagaggggg 318
Query: 119 gg-cttgcccttacctttatactccatgaggtcatataagaaaccactccatgatttatt 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gggcttgcccttacctttatactccatgaggtcatataagaaaccactccatgatttatt 378
Query: 178 tctaggaactaaatttataaaatagagaacatatgtggttgttattcgctgacatgtata 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctaggaactaaatttataaaatagagaacatatgtggttgttattcgctgacatgtata 438
Query: 238 cgtattggcgactgctattactataattttttccttaatgtacaaactcctcagtaacat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgtattggcgactgctattactataattttttccttaatgtacaaactcctcagtaacat 498
Query: 298 agaaggaaattttgaagcatataaaaattc 327
||||||||||||||||| ||||||||||||
Sbjct: 499 agaaggaaattttgaagtatataaaaattc 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 728
Length adjustment: 9
Effective length of query: 318
Effective length of database: 719
Effective search space: 228642
Effective search space used: 228642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_d05.g1 MSMg01no465_d05.g1 CHROMAT_FILE:
MSMg01no465_d05.g1 PHD_FILE: MSMg01no465_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:13 2005
(507 letters)
>mm_chr12_91107414_91108320
Length = 907
Score = 917 bits (474), Expect = 0.0
Identities = 498/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 1 tgattcccacaagactgatatttagggagatcagctctttatcagactagattcaa-ata 59
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 879 tgattcccacaagactgatatttagggagatcagctctttatcagacttgattcaaga-a 821
Query: 60 cttgctccagcactcattatctgtgtgacacttaactgtcttaagcattagttgcttctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cttgctccagcactcattatctgtgtgacacttaactgtcttaagcattagttgcttctg 761
Query: 120 aacatcgagggtaataatagtattaatatcggagaattgatgtcagcatgaagagaaagc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 760 aacatcgagggtaataatagtattaatatcggagaattgatgtcagcatgaagacaaagc 701
Query: 180 tttgtgtaatccatgatatctcacaagcagagaacttaattaactctaaccatcatcatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tttgtgtaatccatgatatctcacaagcagagaacttaattaactctaaccatcatcatg 641
Query: 240 tacctgttgacttagggattcttaaggaaatacctaaaattgccaaagagactcccagaa 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tacctggggacttagggattcttaaggaaatacctaaaattgccaaagagactcccagaa 581
Query: 300 atctgcctctgccttcatcctatgactcagggctggccctgattccaaatgcaatacctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atctgcctctgccttcatcctatgactcagggctggccctgattccaaatgcaatacctc 521
Query: 360 tccttattaataattaatagatctaatatccaaaagaatcaatgaggtgggtgttggctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tccttattaataattaatagatctaatatccaaaagaatcaatgaggtgggtgttggctt 461
Query: 420 atcactcctaaacaagaaagctcactctttacaccaacaaccatcaaagattgatctgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atcactcctaaacaagaaagctcactctttacaccaacaaccatcaaagattgatctgag 401
Query: 480 ctactttgcacatgcttagaaaatcc 505
|||| ||||||||||| |||||||||
Sbjct: 400 ctacattgcacatgctcagaaaatcc 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
