BAC Information

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BAC

Clone NameMSMg01-465D24
Chromosome12 (Build37)
Map Location 34,532,452 - 34,532,704
singlet/doubletsinglet
Overlap genenone
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806
Downstream geneFerd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465D24.T7 (MSMg01no465_d24.b1)MSMg01-465D24.TJ (MSMg01no465_d24.g1)
ACCAG549474AG549475
length842824
length of high quality
(start - end)
49 (57 - 105)261 (66 - 326)
definitionCHROMAT_FILE: MSMg01no465_d24.b1 PHD_FILE: MSMg01no465_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:17 2005CHROMAT_FILE: MSMg01no465_d24.g1 PHD_FILE: MSMg01no465_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTAAACGACTACTATAGTCAGAGAATGCGCGGAATTCTGCTCCA
ATAGCAATGTATGCAGAGACATGGGTTGTTGAAAGGGCTGTGGGGAGAGA
GTGGGAGAGAGAGGCATATTTACTCTCCCCCCTTTCTTTTCCCTTTCTCT
TTTCTTTCTCGGGGGGCGCGTTTTTGTCCCCCCCCCTCCCTTTCCTTTCT
TCTCTTTTTTCGTCTCCCCCTTCCCAGTTCTTTCCCCTCTTGTTCTTTTT
TCTTCTTTCACCTTTTTTTCTCTCTCTTTCTTTCTTCTCTCCTCCCTCTT
CTCCTCTTTCCACTTTTATTTTTCTCATTATATATGCCCCTTTTTACACC
CTTATCACCTTTCTCCTCTCAATACACCAATTCCTGTTACATTCTTTGTA
CCCCTCTTTTCTTCCCCCCCCCCCCCCCACCTCTTCCCCCTCCCCTTCCA
TTCACATACCTTTCACCTTTCTTTTCCCCCCCTTCTCTTTTTTCCCTTTT
CCATTCCTAAATTTTTCCCTTCCCCTCCCATACTCACTCCTTCCCTCTCC
CCTCTCCTTTTTTATATCCCACCCTTTTCCATATTCTACTCATATATATT
CTTTCCCCCCCACTTCTTTTTCTCTTTTCCCCATCACATTTCTATCACCA
CCTCCCTCTTTCTATTTTTTCCCTCTCCTCCCCCCCCCATCCCTTCCCTT
TTTCCTCATTACTATAATTTTCCTTCCTCTTTCGTGGATTCTTCTCATTA
TCCCCACCTCTTACCTTTTTCTTTATTCCACTCCCTCTTTACCCCAAATT
CCATTCTCACACCATTATCCCACCCCCTTTTCCATATATCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGACTTGGAACTGATGAAATTCTTTTAGAATAAGT
CAAAGAAAAATGTGACAGTAAAGCAGAGACAATGACAATAATGTAGGCAG
AAACAGAAGTGAGAAATTTGTAACTGGTTATATTGATCATACGGAGTGAC
TGGCTAGATGTTATGCGCCAAGGGAAGGGGTGTCTGGCTTTGCAGAACGA
GATTATTGAATAAGTGTGTGAAAGTCTGAGTTACCCTACATGAAGGAGGT
CCTATTTCTTTTTCTTTTTTTTACATAAAAAAATGTATTTACTTACAAGT
ATTCTGACGGTCTACATATTAGCCACAATTTAACTTTCTCTTTGCACTTA
CATAGCGCCACCCCGCCTATTACACTTTTGTTTATTCCCCTCACTCCTCT
CCCTCTTTATACCTCTCGTTTCTCTCTCCTATTTTCCCCCCCCCCTTTTC
CCTTCCCCTTTTTCCACCCCCCCCCCCCCCCATCATTATTTCTTCCTACC
TGCCCTCCTCCTTCTTTCTTTTTTTCCCCTTTGTCTCTTTCTTTCATTTT
TTTTCCACTCTTTTCCCCTTCCCTCTTTCACCTCCCCCTCTCTTTGTTTT
TTTTCTCCTTTCTTCTTCTTTTTTTCTTCTTTCTCTCCTCTTTTCCCCTT
TCTTTTTCCCTTTCCCCCCCCCTTCCTTCTCTTTTCCACCATTCACCCTC
CACTCTTTTTTTCTTTTTTTCCCCCTCATTTTCCGCTGTCTTTTACCTTC
CACTCACCTTTCTTGTCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_d24.g1 MSMg01no465_d24.g1 CHROMAT_FILE:
MSMg01no465_d24.g1 PHD_FILE: MSMg01no465_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:17 2005
         (261 letters)



>mm_chr12_34532252_34532911
          Length = 660

 Score =  375 bits (194), Expect = e-108
 Identities = 239/254 (94%), Gaps = 1/254 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttggaactgatgaaattcttttagaataagtcaaagaaaaatgtgacagtaaagca 60
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 453 agacttggaactgatgaaattcttctagagtaagtcaaagaaaaatgtgacagtaaagca 394

                                                                       
Query: 61  gagacaatgacaataatgtaggcagaaacagaagtgagaaatttgtaactggttatattg 120
           |||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 393 gagacaatgacaataatgcaggaagaaagagaagtgagaaattcgtaactggttatattg 334

                                                                       
Query: 121 atcatacggagtgactggctagatgttatgcgccaagggaaggggtgtctggctttgcag 180
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 333 atcatacggagtgactgg-tagatgttatgcgtcaagggaaggggtgtctggctttgcag 275

                                                                       
Query: 181 aacgagattattgaataagtgtgtgaaagtctgagttaccctacatgaaggaggtcctat 240
           ||||||||||||||||| || |||||||| |||||  ||||||||||||| || ||||||
Sbjct: 274 aacgagattattgaataggtatgtgaaaggctgaggcaccctacatgaagaagatcctat 215

                         
Query: 241 ttctttttcttttt 254
           ||||||||||||||
Sbjct: 214 ttctttttcttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 660
Length adjustment: 9
Effective length of query: 252
Effective length of database: 651
Effective search space:   164052
Effective search space used:   164052
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)