BAC Information

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BAC

Clone NameMSMg01-465H24
Chromosome12 (Build37)
Map Location 56,083,991 - 56,084,413
singlet/doubletsinglet
Overlap geneBaz1a
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2
Downstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465H24.T7 (MSMg01no465_h24.b1)MSMg01-465H24.TJ (MSMg01no465_h24.g1)
ACCAG549665AG549666
length771813
length of high quality
(start - end)
454 (65 - 518)135 (68 - 202)
definitionCHROMAT_FILE: MSMg01no465_h24.b1 PHD_FILE: MSMg01no465_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:37 2005CHROMAT_FILE: MSMg01no465_h24.g1 PHD_FILE: MSMg01no465_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCCTATTTCGAGAGAAGGGCGGAATTCATCTTTCT
ACGACTAGCAGGGTCTGTGCTTCTTGCTATTTACTATCACATGTTGCTTC
TATGTTGAATTCTTCCTGTTGCCAAAGTCTGTAGAAATAAGCACAAAGAA
ACTAGAATTACAAGCTACTCAGGTTAGCTCCCTAGGTCTCTATAGATGGT
GACTGCTCTCTGGTCAGCTCAGCACCGACCTTACTGCACCCCTCAGTGAT
TAGGCTCTAGGTGGGAAGTGGAGAAATCAGAATGCCCTTTGTTTATGAAT
GACAAGGTGTTGTGTGTAGCCCAAGCTGGCCAGGAACTTGAGACCCTCTT
GCACTTGAGTTGCTGGGATTGCAGACATGTGCCACCACACCTGGTGCCAT
CAATTTGTCGTGGGGGAAAATGCTTTTCATACCAGCCAGTTTCCACATTG
ATGGCCGGATACACAAGATTGAGTTGTAGTCAAAAGCTATGTGATGAGCA
TGCACTCTTCAAGAGAATGTGGATAATCTTTCAAACTAGTGTCTTCAAAT
TGGGTGGATTTTTGCTTCCTTTCGGGAATAAGTTGGGCCAATGTCCCTGA
TTGTTTAACCCACAGCCCTTTTTTTTCCTCCCCAACGGGGAGGAAAAAAT
CTCAAAAACCCTTTTCAAATTTCTTTCCTTAACCTTTTTCTCCCCCCCCC
CAAGACCCCCTTTTTCCCCTCCGGGGGAAAAAAAAATTCTTTCTTCCCAT
GCCCACTTTTATCCTTTTTTG
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGAAATGCTCCTGTCTCTGTCTCCCCTCCCT
TGATGGAATTAAAGGGAATGAAAGGGAATCCACATACCTAATCATTTGTG
CATGTGTGTATATGTATGTGTGTTTATATATGTATGTATGTGTATATGCC
CACCCCCCCCCCCTTCNCCCCCCCCCCCNCCCCTCTCNCCCCCCCTCCCC
NCTCTTCCTCCCCCCCCTTCTTCTTCCCTTTTTCTCCCTTTCTTTTTCTT
CCNTCTCTTTTTTTTTTTTTTCTTCTTCTTTTTTTCTTCTCTCCTTTCTT
TTCCCTCCTTTCTCTTTTTTTCCTCCTTTTTTTCTTCTTTCTTTTCTTTT
CCCCCCCCCCCCCCCCTTCTCTTTCCTTTCTTCCCTTTCCTCCTTTCCCC
CTTTCCCTCCCTTTTCCCCCTCCCTTTTCTCCCCCCCCCTATTCCTCTCC
CCTTTTTCTCCCCCTCCCCCCCCTTTTCTCTTCTTTCTTCATTCTTCCCC
TTCTTTTCTCTTTTTTCCCTCTCTCCTCCTTTTATCCTTTCNCCCCCCCC
CTCTCCCTCTTCTTTTTTTCTTTCCCCCCTCCTTTCTCTTTTCTTTTCTT
TCCTCTTCCTTTTTCTTTCTTTCCCCCCTCTTCTTCCCCTTCCTTTCTCC
CCTTCTCCCCTCCTTCTCTCATTTTACCCCTTCCTATCTTCCCTTTTTTT
TTTTTTTCTTCTCTATTTTATTATATTTCTTATTCTTTTCACTAACATCT
TCATTACTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_h24.b1 MSMg01no465_h24.b1 CHROMAT_FILE:
MSMg01no465_h24.b1 PHD_FILE: MSMg01no465_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:37 2005
         (454 letters)



>mm_chr12_56083991_56084844
          Length = 854

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgcttcttgctatttactatcacatgttgcttctatgttgaattcttcctgttgcca 60
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 423 ctgtgcttcttgctatttactatcacatgttgcttctatgaagaattcttcctgttgcca 364

                                                                       
Query: 61  aagtctgtagaaataagcacaaagaaactagaattacaagctactcaggttagctcccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagtctgtagaaataagcacaaagaaactagaattacaagctactcaggttagctcccta 304

                                                                       
Query: 121 ggtctctatagatggtgactgctctctggtcagctcagcaccgaccttactgcacccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggtctctatagatggtgactgctctctggtcagctcagcaccgaccttactgcacccctc 244

                                                                       
Query: 181 agtgattaggctctaggtgggaagtggagaaatcagaatgccctttgtttatgaatgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 243 agtgattaggctctaggtgggaagtggagaaatcagaatgccctttgtttatgaatgacg 184

                                                                       
Query: 241 aggtgttgtgtgtagcccaagctggccaggaacttgagaccctcttgcacttgagttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aggtgttgtgtgtagcccaagctggccaggaacttgagaccctcttgcacttgagttgct 124

                                                                       
Query: 301 gggattgcagacatgtgccaccacacctggtgccatcaatttgtcgtgggggaaaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gggattgcagacatgtgccaccacacctggtgccatcaatttgtcgtgggggaaaatgct 64

                                                                       
Query: 361 tttcataccagccagtttccacattgatggccggatacacaagattgagttgtagtcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tttcataccagccagtttccacattgatggccggatacacaagattgagttgtagtcaaa 4

              
Query: 421 agc 423
           |||
Sbjct: 3   agc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)