BAC Information

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BAC

Clone NameMSMg01-465M09
Chromosome12 (Build37)
Map Location 100,333,189 - 100,333,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M09.T7 (MSMg01no465_m09.b1)MSMg01-465M09.TJ (MSMg01no465_m09.g1)
ACCAG549875AG549876
length774761
length of high quality
(start - end)
407 (63 - 469)244 (64 - 307)
definitionCHROMAT_FILE: MSMg01no465_m09.b1 PHD_FILE: MSMg01no465_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:00 2005CHROMAT_FILE: MSMg01no465_m09.g1 PHD_FILE: MSMg01no465_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCT
GAGTTTCCGCCCCCACAATTTGCTATCCTAGCCTCTTGACAGTGCCCCCA
TCGGCTTTATCCCTCCAGGCTACCTGTGCTCTGGAGTCCCCTCTCCAAGC
ATCAGTCAATGGCATGACCTTTTTGAACACAGGACCCCAGCATCACATGC
TCCTCTCTCTATAGACTCCCCCCTCTTCTCCCAAATCCTCACAGAGCACC
CTTGGTTTCTCTCCCCACTCCCATTCCCCTTGTCTTGTATAGCTGCAATA
GCTCTTCAGATATTATACTTCTGCTCCAGGCCCTTCTTTCCTGAATTTCT
CTTTCCCTTTCTGTTTGGCTGACATCCTCTCTCTGCTTGGATGGTGGCAT
CTTTAGGGAACTCACAGAGCACCTTAGGCTGTCCTTAAGGCACCTATCAC
CATCGGAACCAAGTATCTGTAAAATGATTTGCACATCAGCTATTCTCTGC
TAGCCTGGAAAGCTCAAGAGAGAGCCGGAACGTTATTTGTCACCGTGTCC
TATGGAACATCTAAAGATCTCGAAAACTTTCTTAGACAGAACGGGAAACT
GGAAAAATAAAAATTTGGGGGGGGTTTTAAAGAAAACAAGTTCCCTCTTT
ATTCTCTCCTTTTTTTTATTCTTTCCCTCTTTTCCGCATATCACGCCACC
AGCACTTACTTCTATCCTATTATAGTTTTTCCTCCTTCGTCCCCTTTCAC
CTCTTCAACTCCCCCTCTCGGCCN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTACTAGCAGAAATTCTTTGCTTAGCTCTGTACCTCATTTTTTAACAGG
GTTGATTTTTCTGGAGTCCAACTTCTTGAGTTCTTTACATATGTATTGGA
TATTAGTCCTCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTG
TCGGTGGCCTTTTTGTCTTATTAACAGTGTCTGTTGCCTTACTGAAGCTT
TGCAATTTTATGAGGTACCATTTGTTGATTCTTGATCTTACAGCACAAGC
CATTGCTGNTTTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGC
TTTCCCACACTTTCTCCTCTATAAGTTTCAATGTCTTTGGTTTTATGTGG
AGTTCTTTGACCACTTAGACTTGAATTTTGTACAAGAAGATAAGAATGGA
TCAATTTGCATTCTTCTACATGATAACTTCCAGTTGTGCCAGCACCAATT
TTTGGAAATGCTGTCTTTTTTCCACTGCATGGTTTTAGCTCCTTTGTCCA
AGATCAAGTGACCATAGGTGAGTGGGTTCATTCTTCGGGTCCTCAATTTT
AATTCTATTGACCTACCCTGCTTGTTTGCCCCTTCACCCACCATTTTTTT
TTTTTTTCTTACTTTGTTCTCCCGACTGTGGGTTATCCCCCCCTCACTTT
TTTATTCCTTTTCCAATTTCCCCTCCCCTTCTCTCTCCCCTTCTCCTTTT
CCATCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m09.b1 MSMg01no465_m09.b1 CHROMAT_FILE:
MSMg01no465_m09.b1 PHD_FILE: MSMg01no465_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:00 2005
         (407 letters)



>mm_chr12_100332989_100333795
          Length = 807

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacaatttgctatcctagcctcttgacagtgcccccatcggctttatccctccaggcta 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ccacaatttgctgtcctagcctcttgacagtgcccccatcggctttatccctccaggcta 548

                                                                       
Query: 61  cctgtgctctggagtcccctctccaagcatcagtcaatggcatgacctttttgaacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cctgtgctctggagtcccctctccaagcatcagtcaatggcatgacctttttgaacacag 488

                                                                       
Query: 121 gaccccagcatcacatgctcctctctctatagactcccccctcttctcccaaatcctcac 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaccctagcatcacatgctcctctctctatagactcccccctcttctcccaaatcctcac 428

                                                                       
Query: 181 agagcacccttggtttctctccccactcccattccccttgtcttgtatagctgcaatagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agagcacccttggtttctctccccactcccattccccttgtcttgtatagctgcaatagc 368

                                                                       
Query: 241 tcttcagatattatacttctgctccaggcccttctttcctgaatttctctttccctttct 300
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcttcagagaaaatacttctgctccaggcccttctttcctgaatttctctttccctttct 308

                                                                       
Query: 301 gtttggctgacatcctctctctgcttggatggtggcatctttagggaactcacagagcac 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 gtttggctgacatcctctctctgcttggatggtagcatctttagggaactcacagagcac 248

                                                          
Query: 361 cttaggctgtccttaaggcacctatcaccatcggaaccaagtatctg 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttaggctgtccttaaggcacctatcaccatcggaaccaagtatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)