BAC Information

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BAC

Clone NameMSMg01-465P07
Chromosome12 (Build37)
Map Location 12,094,401 - 12,094,852
singlet/doubletsinglet
Overlap genenone
Upstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465P07.T7 (MSMg01no465_p07.b1)MSMg01-465P07.TJ (MSMg01no465_p07.g1)
ACCAG550014AG550015
length1,572728
length of high quality
(start - end)
---455 (75 - 529)
definitionCHROMAT_FILE: MSMg01no465_p07.b1 PHD_FILE: MSMg01no465_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:15 2005CHROMAT_FILE: MSMg01no465_p07.g1 PHD_FILE: MSMg01no465_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGTCGTCAGTGAGCGATGATTAAGTACTGATNGAGANTNCTTTGTTCC
TTCTGTTCTGCTGCAAACACGNGTGNTGGTCTTTCCGCCCCNCACGATAT
CTTCCTCTTCTTATCTCACGAACGCATACAGTATTATCGACTATATATAT
ACATCTATCACACNACAGTGAGAGATGAAGAATGAGAGATAAAGGCGGNG
GTCGGGTGACAGGCGCGCGATAAGGACACGCTATGTTTATTGTTGTTGTT
ATATCTCGTATTTTATCTATCCTAGACTCATCATAGAGATTACTACTTGT
ATGTCGTCGTCGACCGCAGCTACGCGGCGTGTGTGTACTCCGTTATCGAT
CCTCTCGTCTACGCTGACGCGCTCCGCTGGTGACAGCTGCANAGACAGTA
TTGTATTATCAGACTATACGCGCGCTATTGGTAGAGCGGTGNGTCGTTCG
TTGGTCGATGTAGGAGTGACGCGCGCGGGCGCGTGCTACGAGGACAACGG
TGGCAATNTGATAAATAACATNCTATACGACTATCGCTGATTCGTTCTAT
GTTATTATTCTGCCTCCTTCTGTGTACGATCTATACTCACATCTAGACAT
CGACAGCGAACGAGCTGGAAGTAGTTATCTACTATGGTCCTGCACTTATT
GCACGAACCCGCGCTCCGTTGATCCGTTACGTGTTATGANCGCANATATC
TAATCATAACCNATAGTGTGGATAAGATGCGATATGGAATACGTCGGTCA
CACATGATTATGCGTGCTCTCATTCTACATACTCCTCTTCACACGCACAC
TCGTGTGGTCGTGTGGATTTCGCTGTATCTCGCCTTGTTTCTCACCACGG
ACGCGCACAGATAGAGTAGACAGGCCGCACATAGCGCTTATATACACTCG
AGCTGCGAGTGCACAGCTATTGTGGATCGTACAGCGNGCCGCGTGGCCAT
GCGCGTGACTATGAACGCACGATAGGACTAGTGACGCCGTACACTACTNC
AGCGCGATCGTGTTAATCGCGTTGTCGGCAAGTCGTGTTCGGTCATACGA
TGTGTTCGCGATATCGAGAATAGAGGAGCCAGTGAGTCGCGCGTACATGT
GTCGTGATTGACANAATTCGATCACACGTTGACGCACGNGCTCTATNTAC
GTGCGCGACGCTTGCTACACTATATAATATCTGCGCCAACAGACAGACGT
ATATCACAGATCGATTTCNACCACACACGCGTCTCACCTCTCTGCTTCTC
TTCACACGCTTCGTCACACGCGCTCTACGTCGCTCGTGTTATCGCGTGAC
ACTAGACGTCGAGCGTTACGTATAGTGAGGATCGCGGCGACGTATGTAGC
ACATAGATGAAATATGATAAATACGGAGGCATAGTATGATATAGCACATG
ATAGTGAGGATCTCTGTGGCGTCCGGTCAGCGCAGCTGTCATCGTGATAT
AGTGTGCGAGACGCGCATGCTGTCACTTATGATATGATGTTATATACATC
TATGTCGCACCGCGTCTAGCACACATCATGTNANTATCTATCACGCTGAC
TCTCACTCTCTCCGCGCCGCCG
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTAAATAAGAATTCTCCTTTAGC
ATAGAAATTAAATCTGAACAGTGGCATGAGATCATGCATGAGAGCTCCCT
GAATTACAGCAGATGTACCATATGGTCAAGATCATGGTTGCCATTCACAT
TCACTACCCCCACTTTCTACACGCTATGCAAAGTCTGAAATATGTTTATG
ACTAGAGACTACACTAGAGAACTTGGCAACTACTTTTAACAGGGAAAATT
CTGTCAATCATACTTTCTGAGGTATATCACTCTCTGGCATTTACTCATCA
GAATGGAAGTTGCAAGATGACAGGTAAAGCCATTGTTGTTGGTATACTCT
TCATTACTGCTAGCAACTTTAATATTTTAAAAAGTGTTGGAAGAATCCTT
CTATATGATTGAGTTTGCCGAATCCTTGTCTCATACTGTCACCAACCTGC
ACCTTCTTTTTTCTTCACAATTTTTGTGAGTCCCTCATTTCATATTGGCA
GAATGAATTGTAAGAATAAAACAGTATCTTAGCAATTCCATATACCCTCT
ACCATATGACTCCCTTACCCAAAGTTATCGCNAGGATATGCTTCCAAATC
TTCCTTCTGTGAAATTAACAATTCTATTTAAACCCATCTGATGGGTAACG
CTTTTAAAGTTATTGGGGTCACACCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_p07.g1 MSMg01no465_p07.g1 CHROMAT_FILE:
MSMg01no465_p07.g1 PHD_FILE: MSMg01no465_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:15 2005
         (455 letters)



>mm_chr12_12094201_12095052
          Length = 852

 Score =  822 bits (425), Expect = 0.0
 Identities = 447/455 (98%), Gaps = 3/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttaaataagaattctcctttagcatagaaattaaatctgaacagtggcatgagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttaaataagaattctcctttagcatagaaattaaatctgaacagtggcatgagatca 260

                                                                       
Query: 61  tgcatgagagctccctgaattacagcagatgtaccatatggtcaagatcatggttgccat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatgagagctccctgaattacaccagatgtaccatatggtcaagatcatggttgccat 320

                                                                       
Query: 121 tcacattcactacccccactttctacacgctatgcaaagtctgaaatatgtttatgacta 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tcacattcactacccccactttctacacactatgcaaagtctgaaatatgtttatgacta 380

                                                                       
Query: 181 gagactacactagagaacttggcaactacttttaacagggaaaattctgtcaatcatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagactacactagagaacttggcaactacttttaacagggaaaattctgtcaatcatact 440

                                                                       
Query: 241 ttctgaggtatatcactctctggcatttactcatcagaatggaagttgcaagatgacagg 300
           |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgaggtatatcactct--gacatttactcatcagaatggaagttgcaagatgacagg 498

                                                                       
Query: 301 taaagccattgttgttggtatactcttcattactgctagcaactttaatattttaaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 taaagccattgttgttggtatactcttcattactgctagcaactttaatattttataaag 558

                                                                       
Query: 361 tgttggaagaatccttctatatgattgagtttgccgaatccttgtctcatactgtcacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgttggaagaatccttctatatgattgagtttgccgaatccttgtctcatactgtcacca 618

                                              
Query: 421 acctgcaccttcttttttcttcacaatttttgtga 455
           ||||||||||||||||| |||||| ||||||||||
Sbjct: 619 acctgcaccttcttttt-cttcaccatttttgtga 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 852
Length adjustment: 10
Effective length of query: 445
Effective length of database: 842
Effective search space:   374690
Effective search space used:   374690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)