BAC Information

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BAC

Clone NameMSMg01-466A10
Chromosome12 (Build37)
Map Location 11,439,352 - 11,439,874
singlet/doubletsinglet
Overlap geneVsnl1
Upstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
Downstream geneEG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466A10.T7 (MSMg01no466_a10.b1)MSMg01-466A10.TJ (MSMg01no466_a10.g1)
ACCAG550068AG550069
length7471,858
length of high quality
(start - end)
530 (54 - 583)---
definitionCHROMAT_FILE: MSMg01no466_a10.b1 PHD_FILE: MSMg01no466_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:21 2005CHROMAT_FILE: MSMg01no466_a10.g1 PHD_FILE: MSMg01no466_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCTACATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAG
AATCCGCGGAATTCATTATGTTGCCTGTCATATTTGCATGCAAGCACTTC
ACCAACTGAACCATTCCCAAGCCCCCATGAACTCAATTCCCTCTATTAAA
AAAAAAACAATTGTCTTACATTCCCAATATCACAAATCGGAGGTGAACAG
AAGCCATTCTGTATGATGAAAATGATCGTTTGGAATGGCATTAACATACT
GGGCTTAGCAATAAGAAATTACAGGTTTGTGGCTGATATTGATGCTGTAT
GCCATTTTTCAAAACTCCTTTGGTAATCCCTCTGAACTGTTCAGAATCCA
CATGTGTATACAGTTCCATTAAACACAACCCTCCCAATCACGCTACGGTA
TACAGAAAATCCTGTAAGGAAGACTATTAATATTCTTGGGCACGTTTTTC
AATTATAGAACATATAGCCAACCAAAGCAAGGCCCTCAGCAGCCACAAGT
CTCTGGGTCTCCATTGAGGCTTCCTGGTATCTAGAACAGCCTGGGACAAA
ACTCCAACATCACGGCATGTATATATATATTACATACNCCCATATATATG
AACAGAAGAAATCCAGGAAATAGCTCATCCCCCTTTAGAAGAAGTTACCA
GGAAAAGGAGGGGAAAAAGGTGCCCCTTGGGGGAAAAGCTGGGAGCCCTT
GTTACCTCCAAAAAAAAAAACTTAAAACATGGTTAATTCTCTTTGTG
AGTTTATGTAGAGCGAGNTAGTGATGGTNCAAANCANAAAACCAAAGTAA
TCTGTCTTTTNGTTNATTGTNNCNGNGTNCANCTTCGTCTCATCCTCATC
CATTACACAGANCGTCAGTAGTNTGAGTATATACCTATNAGCACACATAT
TCATGATCTATCGTATCNACANACGANCAATANCACTAGAGTATTAGAGC
AGATGATTGTATNNTCTCGAGAGTAGCATACACAACACCAGATGCTGTGA
CGCGCTNCNTCTAGTAGNTGATNCCTCGTACCTACTCGCATCGTACTGCA
AGTCTCAGCGTCTGATACGTAAGTCCGATCTCGATGCCTCCAGATGCTGT
NCTATANTACANCTACACCATGATATATTTGTATACNCAGCTACTCTGCC
TTNTTCTCTATCCTTTGTGTATCACTCCTNACACCACATATACTACTAGT
GAATGATATATGCTACGAAGATTCTGACGCATCGGACGTCCTGTTATATA
TAGTGTAGTATGATCGNATCTCGTATCGATATTCCTGCGAGTNCCTAGTG
ACTGCATCTGGCATCCTGTACTGATCTACAAGTAGTGATCTGACGCGAAC
TGCTATNTNTCNTGACGGCGACATCAATCNGCCGTGATACTCTGAGTACT
GGTTCTCNCNGCATATATTTGATGCATTCTCATAGTATATCATAGCAACG
AAATGACGCGATACGCACNACAGTAAGCACGANACGATGATTGAGGCTAG
ACACTAACAAGCGACGACTCTGTATATCACGCCTACTACTCNTCTCACAT
TATACTATATATCTNACTCCTCACACATGTACTCTATCCCAACACGNATA
TCTCATTCTGATGTTAGCTCTAGTATCANTAGTACATCAAATTATCATGA
GCACGCTGCTATCGTATATGTACGATCAGTGACTGCGAATAGTCTGTCGC
ATCGACTTCACNTGCTACTTCTANTGCGATGCCGAGCTGACAGGCGTCAC
TCGCTGGATGCAGTTGTCTCGNCTGCTGCNGTCGTCGTGTCATGTCGCGT
CGTGCTGTNCTCAGTAACAGTGTATGTGCCTGCTATCTACACGCGCNCGC
TATTAGCGTGAGCTCGNTGATCGCACTGCATACGCGTACTACTNCATANT
ATATATATATATATCAGATTACTAGTATATGACTATATGTCATACTATCG
ACGCACGAAANGGTACTTGNATCAGATTATACGTCGCAGTACACGAACAG
ACGACATCTAGCTGNGCATACTAGAAACGACTCGTCGCGGCGAATGATGA
TGTAACCTGATAGCTCTATATACCATGAAGTATAGAGTATNACTGTATCA
GTGTCATAGTGNCGTGACTGATAAGTGTNTATCACGCATACANCTCGATA
ACTCATGATCACGAANGCGACATCAGTACAGTGCAGTTAGTTANCGATAT
CNGCGNCATNATCGCATCTATNGTACTGTAGTATAGTGATGCACTNCTNA
TATTGATGCAGACAGCGACATATCNANCTACGTAGTACACTGCGCCCATC
GCTCTGATAGTTGCTGCATCGGAAAGCCATCGTCACGATGAATGTGAGTG
GATCAGTGACTCGCATAGTACGCGCTGCCGACTGNACTGAGTCACTCGAT
NGACATAGAACCTTGCACTGCTCATGTACAGATATGCTGACCGTATGCAC
GTCTATAGCTACTAGTATTGCGCTGTACACTCATGACTCGTCTAATGCNA
GTAGTGAATCGATATANTATAGTGCANACATATGGCCTTCCCATCGCATC
GTCTAGATATCCACTCGGACACGCCACGAGATGACNAGNATATACAGCAG
ATCACTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_a10.b1 MSMg01no466_a10.b1 CHROMAT_FILE:
MSMg01no466_a10.b1 PHD_FILE: MSMg01no466_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:21 2005
         (530 letters)



>mm_chr12_11439147_11440074
          Length = 928

 Score =  957 bits (495), Expect = 0.0
 Identities = 517/525 (98%), Gaps = 2/525 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcattatgttgcctgtcatatttgcatgcaagcacttcaccaactgaaccattccc 65
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattatgtggagtgtcatatttgcatgcaagcacttcaccaactgaaccattccc 265

                                                                       
Query: 66  aagcccccatgaactcaattccctctattaaaaaaaaaacaattgtcttacattcccaat 125
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 266 aagcccccatgaactcaattccctctattaaaaaaaa--caattgtcttacattcccaat 323

                                                                       
Query: 126 atcacaaatcggaggtgaacagaagccattctgtatgatgaaaatgatcgtttggaatgg 185
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcacaaatcggaggtgcacagaagccattctgtatgatgaaaatgatcgtttggaatgg 383

                                                                       
Query: 186 cattaacatactgggcttagcaataagaaattacaggtttgtggctgatattgatgctgt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattaacatactgggcttagcaataagaaattacaggtttgtggctgatattgatgctgt 443

                                                                       
Query: 246 atgccatttttcaaaactcctttggtaatccctctgaactgttcagaatccacatgtgta 305
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 atgccatttttcaaaactcctttgggaatccctctgaactgttcagaatccacatgtgta 503

                                                                       
Query: 306 tacagttccattaaacacaaccctcccaatcacgctacggtatacagaaaatcctgtaag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tacagttccattaaacacaaccctcccaatcacgctacggtatacagaaaatcctgtaag 563

                                                                       
Query: 366 gaagactattaatattcttgggcacgtttttcaattatagaacatatagccaaccaaagc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaagactattaatattcttgggcacgtttttcaattatagaacatatagccaaccaaagc 623

                                                                       
Query: 426 aaggccctcagcagccacaagtctctgggtctccattgaggcttcctggtatctagaaca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaggccctcagcagccacaagtctctgggtctccattgaggcttcctggtatctagaaca 683

                                                        
Query: 486 gcctgggacaaaactccaacatcacggcatgtatatatatattac 530
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 gcctgggacaaaactccaacatcacggcatgaatatatatattac 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 928
Length adjustment: 10
Effective length of query: 520
Effective length of database: 918
Effective search space:   477360
Effective search space used:   477360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)