BAC Information

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BAC

Clone NameMSMg01-466D07
Chromosome12 (Build37)
Map Location 90,467,189 - 90,467,652
singlet/doubletsinglet
Overlap geneNrxn3
Upstream geneEG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466D07.T7 (MSMg01no466_d07.b1)MSMg01-466D07.TJ (MSMg01no466_d07.g1)
ACCAG550206AG550207
length1,155749
length of high quality
(start - end)
---460 (84 - 543)
definitionCHROMAT_FILE: MSMg01no466_d07.b1 PHD_FILE: MSMg01no466_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:36 2005CHROMAT_FILE: MSMg01no466_d07.g1 PHD_FILE: MSMg01no466_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATATAAAAAATATCTTCTTCTNTTTTTTTTTAAGTTTTCTTTAAAAAT
ATTCTCCAAAAATATATCCATTTTGCCTTTCCCGTTATTTTTCTTCATAC
AATAGNCACAACCTCACTCAACCACAGAACACGTACAATACATACAACAC
ACTCAAATTCTTCTAAATAATTATCAACCTCTATTAACACCACTTCTCCT
CCAACACCCACCTCCACCGTCTCTCTCATATCCTAACAACTCATATCAAC
TCCACAACTTCTCTTACTTCATTTATTATAAACTCTAACATTATATCGTC
CCCTCTTTTCTTTAGCTCTCTTTTCTCCCCCGTCCCATTTAGGATATTAC
GTAACCCACAATAATAGTAACAACATAAGGACATATAATTTATATAATTA
GAACCATACACTGATATAATCGACGATAACATAAGCTGAGTATCTGCTCT
GAGACCCCCGACATTCTCTAACTCCATGACAGGATGCACAAGAATTATAG
AAGCAAATCAGAATAATATTAGAATAATTCTAATTTATGAATATAAATTA
TATACATTACATTTTGCATATTAATCAATATTGCTGGCACGATCTGATAT
TATCTTATTAATTTATANCAAATGTACCACAACCAACCACACCTTTAATA
GTATCTTTCCATTACCCTACATGTATTAATTATACTTCCACACCTCTACA
TACGCATAAATTACTAATCTCTCCACCGTAATAATTTATTACTAAAATCT
TTATTTATTACTCTCGCCGATATTAACCTTATACTTTACACATATACAAT
ATTACTTAACCTTATAAACCACTGTATATTATGTACAATATTATTCCCTT
ACTCAATCTCACATATTAATTTATTCTATATTTATCACATATTTAATATA
ACACACATACAACATATAAATCACACCACTCAACGCACCACTATAACACT
CCTACCTCTATAACAATATTATATATTATCACTCACTATTAATAACATGT
NTTTTAATATATTTATTATATAATCGTAATTTATTGCTAAACCAACGAAC
CCAGGAATTATGGATGGAGTGACTACTATACAACAACTAGCAAGACACAC
ATAATCTACCTCCCACAAACTATANCCATCTTATATCACGCTCATAGAGC
GTAAG
CTTCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACAGATGGAGAGAGA
ATCTATAGATGGTACCATGTCAGTGAGAATGTATATGTTCTAGTAGAACA
GAGAATATATATGTGCAGTTAAGGTAGTTTGGGGTTAAATGATGAATAAT
TGTGGCTATTAGAAAAAAAATTGTCTTCAGATCCATAAAAGTTTCCTATC
CAATTGTCCTATTTTTGTTTTTATTAGAAACTTTTGTCATTATTAGCTTT
TTAGTTAATGTATATTCACGTTTTTTATTTTGCATCTTGCTTAATATTAA
TGATATATCAATGACTTCCTTATAAAATTTTAAAGAATATCATAGTCACA
CCAGTGGTATTTGCATAAATATTTTTATATTAAAAGATTTCATACATGTG
TACTGTATGTATATAACTCTCAGAACCTGCTTCTAACCCCTCTCTCTATA
TGAATACAACCTGTTGATCACTTGGTGTTGAATAATTAACTCAGAATCCT
GACCCTAGAGAAGACTGATTTTCCCTTTCTCATTAGTGGTTAATTGTCAT
CTGGCAGTGGCTCCCCTTGGGCATTCCTTCACGTCTGCCTTTATTATTTT
TTTTCCCTGTATAACCCGTTCTGCATCTTTCCCTCGTGCACATTTCCAAC
TCAGATTGACTAAACGATCATCTTCTGCCCCATTCTCTGCCCCCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_d07.g1 MSMg01no466_d07.g1 CHROMAT_FILE:
MSMg01no466_d07.g1 PHD_FILE: MSMg01no466_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:36 2005
         (460 letters)



>mm_chr12_90466993_90467852
          Length = 860

 Score =  832 bits (430), Expect = 0.0
 Identities = 454/464 (97%), Gaps = 4/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacagatggagagagaatctatagatggtaccatgtcagtgagaatgtatatgttctag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 197 agacagatggagagagaatctatagatggtaccatgtcagtgagaatgtacatgttctag 256

                                                                       
Query: 61  tagaacagagaatatatatgtgcagttaaggtagtttggggttaaatgatgaataattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tagaacagagaatatatatgtgcagttaaggtagtttggggttaaatgatgaataattgt 316

                                                                       
Query: 121 ggctattagaaaaaaaattgtcttcagatccataaaagtttcctatccaattgtcctatt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggatattagaaaaaaaattgtcttcagatccataaaagtttcctatccaattgtcctatt 376

                                                                       
Query: 181 tttgtt----tttattagaaacttttgtcattattagctttttagttaatgtatattcac 236
           ||||||    |||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 377 tttgtttttgtttattagaaacctttgtcattattagctttttagttaatgtatattcaa 436

                                                                       
Query: 237 gttttttattttgcatcttgcttaatattaatgatatatcaatgacttccttataaaatt 296
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtttctgattttgcatcttgcttaatattaatgatatatcaatgacttccttataaaatt 496

                                                                       
Query: 297 ttaaagaatatcatagtcacaccagtggtatttgcataaatatttttatattaaaagatt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttaaagaatatcatagtcacaccagtggtatttgcataaatatttttatattaaaagatt 556

                                                                       
Query: 357 tcatacatgtgtactgtatgtatataactctcagaacctgcttctaacccctctctctat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcatacatgtgtactgtatgtatataactctcagaacctgcttctaacccctctctctat 616

                                                       
Query: 417 atgaatacaacctgttgatcacttggtgttgaataattaactca 460
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgaatacaacctgttgatcacttggtgttgaataattaactca 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)