BAC Information

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BAC

Clone NameMSMg01-466J24
Chromosome12 (Build37)
Map Location 45,182,452 - 45,182,644
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J24.T7 (MSMg01no466_j24.b1)MSMg01-466J24.TJ (MSMg01no466_j24.g1)
ACCAG550528AG550529
length767631
length of high quality
(start - end)
193 (129 - 321)---
definitionCHROMAT_FILE: MSMg01no466_j24.b1 PHD_FILE: MSMg01no466_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:11 2005CHROMAT_FILE: MSMg01no466_j24.g1 PHD_FILE: MSMg01no466_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTCCAACATTTGTCTCGCTATACGANGCACTATATTACGATAATCC
GCGGAATTCCTGACTTTTACCACCTGCTAAGATGACAGGTGACCATTTCT
TTTCCTCATCCTGCGATCAACCGGACCAGAATAAAGAAAGATACGGACAT
TTGGAGTACAATAAGTTCCCAGGAATGGTTGAATACAAGATCTTGTCACT
AAAACTCAAGGATGACATAGAACTATGAATCACCACACCAGTGAGGCTTA
GACATCTCTGACTCCTATCATTGGAAAAGTCTACCTATGTTTGGCACAGC
TGAAATAAGTCTCAGATTCTCTTTTCTTAGTACTCCTGATGAACAATACA
CACAGGACATGTAAATCAAACTGATCTCAACAATTAAAGAGAGTCTCAGT
GAAGTTCCTACCCATGTCTGGCACCTAGCCTCTCATTGACAAAATCATCA
GAAATAACTGGAAATAAATCATGTCTTTCTAGATTCATCTAGCCAAGTGA
ATCCTAAGTAGCATATTGTCTTTGATTTCCATTCCTTTCTCAGCAGCTAC
TTCTGATTTGAATTATCTTATGTCATTTATTACTTAATGTGTTTTAAAAA
ATCTTTTCCCCTTGGGTTTCCAAAATTTGGAGGTTGCCATCTTTGGTGTT
TTATATTTCCCCTTTTAAAATCCTATTTTTCCCTATTATTCCCCAAAAAT
TCCTAATTGCTCGATTGCCCCCTGTGTTTTTTCTCCGTATTTTCATCCTG
TTCCTCTTTTTTCTGTT
CAACAGGNNNNCCGCCCCCGCCTCACNNANNGACCAAAANACCCGAANCC
TNGAAANCNNNCAGGCAACGAACAATAGAGAAAACAGCAAACAACAACGG
GGAGACCNAAGGCCCAGCCNAAGCCTAGGCCCNNNNNNNNCCNNNNCNNN
NNNNNNCCCCCCACNCCNNAACCNCCCCCCACCCCCNNNNNNAACAAACC
CCCCCCCCCNCCCCCCCCCCNNAACCCCCCCCCCCCCCNCNNANNNNNAC
CCCAACCNNNNCCCCCCCANAACCCNNNNANCAANNACCCCCCCCNNCCC
CCNACCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCCCNCCCCACCCCCC
CCCCNCCCCNNNNNCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCC
NCCCCCCCCCCCCCCCCCACCCCCCCCCCCAACCCCCCCCCNCCCCCCCC
ACCCNCACCCCCCCCCCCCCCACACCCCCCCCCCNNNCCCCCCNCCCCCC
NCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCC
CACCCCCCCCCCNCNCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCN
CCNNCCACACAACAAACAAAAACAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j24.b1 MSMg01no466_j24.b1 CHROMAT_FILE:
MSMg01no466_j24.b1 PHD_FILE: MSMg01no466_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:11 2005
         (193 letters)



>mm_chr12_45182252_45182844
          Length = 593

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaataaagaaagatacggacatttggagtacaataagttcccaggaatggttgaatacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaataaagaaagatacggacatttggagtacaataagttcccaggaatggttgaatacaa 260

                                                                       
Query: 61  gatcttgtcactaaaactcaaggatgacatagaactatgaatcaccacaccagtgaggct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gatcttgtcactaaaactcaaggatgacatagaattatgaatcaccacaccagtgaggct 320

                                                                       
Query: 121 tagacatctctgactcctatcattggaaaagtctacctatgtttggcacagctgaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacatctctgactcctatcattggaaaagtctacctatgtttggcacagctgaaataa 380

                        
Query: 181 gtctcagattctc 193
           |||||||||||||
Sbjct: 381 gtctcagattctc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)