BAC Information

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BAC

Clone NameMSMg01-466M15
Chromosome12 (Build37)
Map Location 28,192,031 - 28,352,944
singlet/doubletdoublet
Overlap geneLOC100043009
Upstream gene1700020D12Rik, Sox11
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M15.T7 (MSMg01no466_m15.b1)MSMg01-466M15.TJ (MSMg01no466_m15.g1)
ACCAG550653AG550654
length747750
length of high quality
(start - end)
234 (77 - 310)483 (81 - 563)
definitionCHROMAT_FILE: MSMg01no466_m15.b1 PHD_FILE: MSMg01no466_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:25 2005CHROMAT_FILE: MSMg01no466_m15.g1 PHD_FILE: MSMg01no466_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,192,031 - 28,192,264)(28,352,462 - 28,352,944)
sequence
TTTCCTCATAATTTGCGGCGCTAAAAGAANTCACATTCATAGAGGACCGN
GGNAATCTTTTTTTCTACATAAATCCAATAATCCCTGTAGATTTGCAGTA
AATTAGACACACGGTCCCTCAGCCCTTGACACACATTGTGAGGAAATTAT
TTGATTCATTTTCTTGGTGTACTTAAAGCATTCCACTGGTCTGAGAGCAA
TTGGATGCATGAAAGAAATACAAACGTAACAGTTAAACAGCCTCCCAGAC
CGCCCAGACACATCTCAGCCTCGATTGGATGCTACAAATGAGGAGATAGC
TGATAGAAACCATTTTGTGCTTGCTGGACTAGCAAAGCAAAAGCCAATTA
TGATTGGCCATCCCTGACTATAATTTCATCAGTTCAACCCAACAATTCTA
CAGGAAGAAACCTCAGAGACACCATGTTTCCATTCTTCTCCAAAAACTGG
GGAAGGCATGCCAAGGTTCAAATCAGACAAGGCTCTATTCCTGAGTCAAA
GCAGATGCCTTCCAAATCACCTGGTTTGAATTCTCAGGCAAATGCAAATA
TCCCAGTCCATGAATTACCCACAAATCATCCAGTAGGACCCAGAATGTCA
CTCAAGACGTTCAAGTTTCCCTATATAAACCATGGTCTTTGGATTGGGCA
TTGAAAAAAAGACTTTATGGGTAATCCCAAAAATATAGGCCTCACTTTTT
TTATTTTTCACCAAGCCCTGCATTTTCCTACCCCCCCTAATTTTTAA
NNCCCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTGCTATAGTATATGGA
CTCAGAATGGAAGCGCTTCCTATCTTGGCCTTTTGTGTCTTTCCACTGAG
GCACTGCCTGCTTCAGCCCTTGGCTTGCTCACCCTTTCCCCAAGTGTGTT
GGACACTGACTTTGTAGTTGCTTGCGTACAAGCAAGAGTTCCTACCACGA
TTGAAGCCTGTGGGAAAAGCAGACTAAATGGCAAATACCAGGGCAGATGA
GACCCACAATCAAAGTTGATACTTGGTAAGGTGCTTTGCCAGACCTCAGA
CAGAACACTCAACCTAAAGTGCCGATTCAGAGCAGGTATCTGGTAAAGAT
AGCTTCTGGGCTTAATTGAAATGAGCTTCTGTTATGTGGCCAGCCTGAGT
GAATCTAAAACACCTGCCTTCTGAGGATTTGCCCAAGTTCCTGTCTCTTC
ATTTAGATTTAGATCTTCTCAGAGGGTACTTCAGCTACACTCCAGGACAG
GGCCCATATTCAGGAGTAGGTGGCCAACAGAAAACAAACCCCATGTTTTA
CTTTTCATGGCGCTTTTTTGGAAGGTGGAAAAAATTCATTTGCTCTTCTT
CTCTTTTTCTCTTTTAATCCTCATTACCCTTCATTCTTTAATCATTACAC
TCATCTTCATTCTCACCTTTTTTTTATCCCCCATATACTCTTATCCTATC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m15.b1 MSMg01no466_m15.b1 CHROMAT_FILE:
MSMg01no466_m15.b1 PHD_FILE: MSMg01no466_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:25 2005
         (234 letters)



>mm_chr12_28191831_28192464
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatccctgtagatttgcagtaaattagacacacggtccctcagcccttgacacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatccctgtagatttgcagtaaattagacacacggtccctcagcccttgacacacat 260

                                                                       
Query: 61  tgtgaggaaattatttgattcattttcttggtgtacttaaagcattccactggtctgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaggaaattatttgattcattttcttggtgtacttaaagcattccactggtctgaga 320

                                                                       
Query: 121 gcaattggatgcatgaaagaaatacaaacgtaacagttaaacagcctcccagaccgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaattggatgcatgaaagaaatacaaacgtaacagttaaacagcctcccagaccgccca 380

                                                                 
Query: 181 gacacatctcagcctcgattggatgctacaaatgaggagatagctgatagaaac 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacatctcagcctcgattggatgctacaaatgaggagatagctgatagaaac 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no466_m15.g1 MSMg01no466_m15.g1 CHROMAT_FILE:
MSMg01no466_m15.g1 PHD_FILE: MSMg01no466_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:25 2005
         (483 letters)



>mm_chr12_28352262_28353144
          Length = 883

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctgctatagtatatggactcagaatggaagcgcttcctatcttggccttttgtgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aggctgctatagtatatggactcagaatggaagcgcttcctatcttggccttttgtgtct 624

                                                                       
Query: 61  ttccactgaggcactgcctgcttcagcccttggcttgctcaccctttccccaagtgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttccactgaggcactgcctgcttcagcccttggcttgctcaccctttccccaagtgtgtt 564

                                                                       
Query: 121 ggacactgactttgtagttgcttgcgtacaagcaagagttcctaccacgattgaagcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggacactgactttgtagttgcttgcgtacaagcaagagttcctaccacgattgaagcctg 504

                                                                       
Query: 181 tgggaaaagcagactaaatggcaaataccagggcagatgagacccacaatcaaagttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 tgggaaaagcagactaaatggcaaataccagggcagatgagacccacaatcaaagttgag 444

                                                                       
Query: 241 acttggtaaggtgctttgccagacctcagacagaacactcaacctaaagtgccgattcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acttggtaaggtgctttgccagacctcagacagaacactcaacctaaagtgccgattcag 384

                                                                       
Query: 301 agcaggtatctggtaaagatagcttctgggcttaattgaaatgagcttctgttatgtggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcaggtatctggtaaagatagcttctgggcttaattgaaatgagcttctgttatgtggc 324

                                                                       
Query: 361 cagcctgagtgaatctaaaacacctgccttctgaggatttgcccaagttcctgtctcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagcctgagtgaatctaaaacacctgccttctgaggatttgcccaagttcctgtctcttc 264

                                                                       
Query: 421 atttagatttagatcttctcagagggtacttcagctacactccaggacagggcccatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atttagatttagatcttctcagagggtacttcagctacactccaggacagggcccatatt 204

              
Query: 481 cag 483
           |||
Sbjct: 203 cag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)