BAC Information

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BAC

Clone NameMSMg01-466M18
Chromosome12 (Build37)
Map Location 51,775,417 - 51,775,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665071, LOC665077, LOC100039455, Prkcm
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M18.T7 (MSMg01no466_m18.b1)MSMg01-466M18.TJ (MSMg01no466_m18.g1)
ACCAG550659AG550660
length798748
length of high quality
(start - end)
243 (76 - 318)503 (81 - 583)
definitionCHROMAT_FILE: MSMg01no466_m18.b1 PHD_FILE: MSMg01no466_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:25 2005CHROMAT_FILE: MSMg01no466_m18.g1 PHD_FILE: MSMg01no466_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGACCATCC
GCGGAATTCTCACCTTACCCAAACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAAGTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACGACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTATTTCTTTAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCACCAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCATCTATTAATAAGAATGAATTTATGAAATTCCTATC
CCAATGGATGGATCTGGATGGCATCCTCCTGGATGAAGGCACACATTTTC
ATAAGAACCCCTACTCATATGTTTTTCATTTGTTATGTGGGACATCTTTC
CCTTCCCTCTATTTTGAACTTAAGAAACCACATTTTTTCTCGTGCATACC
CCCGTGAACTTTCTTACAACACGGACCATTCCAATTTCCGTATTTTGTTT
ACTCTCTTTCTTTATTATTTTTAGTATAAAATTCCTTTTTTTTTTTTN
TTTCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCACTGTGAACTCCAG
AATGAAACCCTGTCTCATACAATAAAAAATGGGAAAGAAATAGAGCAGCC
AAACGCCATCATTTCCCTTTCTGTTGCTATCAAAGAATACCTAAGGCAAG
ATACTTTACAAAGACAATAGGTATACTTAACTCTCAGTTATGGAGAATTC
CATTCCAAAATCAGCAAGCTCATATGGTTGGAATCCAGTGAGTACTTTAT
GCTGTATAGAACTCAAGGGCAAGAATAGGCACCAGTGCACAAGGAACCAT
AATGAGACAGGAAGCAGAAGGTATTTGAGGGCCCCAAATTAACCTTTTTG
TAACTCACTCTGTGGGAACTAACTGGGATCTGAAAAGAACAATATTGAAG
AACAGCACCTTCAATGATATAATCACTTTCTACTGGGTACCTCTTCAAAG
CTGCACCACCGTTTAACATGGTGACCCTGAAGGCTGACCTTCCAGGACAC
AATCCTTTAGGGGACATAATCAAATCTGCTCTACAGTAGGTTGCCAGGCC
ATACTGAAAGTAAATTAGTTATTTTATTCCTCTGTATTCTTGGGCCTCTG
TAATAACCTGGCTGTTGAAGCCCATAATTGGATAATGATTGTTGCCCTAA
GACAAATCAGGTTTTAATATATTCTATTAATACCGATCCTGGAGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m18.g1 MSMg01no466_m18.g1 CHROMAT_FILE:
MSMg01no466_m18.g1 PHD_FILE: MSMg01no466_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:26 2005
         (503 letters)



>mm_chr12_51775217_51776119
          Length = 903

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccactgtgaactccagaatgaaaccctgtctcatacaataaaaaatgggaaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccactgtgaactccagaatgaaaccctgtctcatacaataaaaaatgggaaagaaa 260

                                                                       
Query: 61  tagagcagccaaacgccatcatttccctttctgttgctatcaaagaatacctaaggcaag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tagagcagccaaacgccatcatttccctttctgttgctatcagagaatacctaaggcaag 320

                                                                       
Query: 121 atactttacaaagacaataggtatacttaactctcagttatggagaattccattccaaaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 atactttacaaagacaataggtatacttaactctcaattatggagaattccattccaaaa 380

                                                                       
Query: 181 tcagcaagctcatatggttggaatccagtgagtactttatgctgtatagaactcaagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcaagctcatatggttggaatccagtgagtactttatgctgtatagaactcaagggc 440

                                                                       
Query: 241 aagaataggcaccagtgcacaaggaaccataatgagacaggaagcagaaggtatttgagg 300
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaataggcgccagtgcagaaggaaccataatgagacaggaagcagaaggtatttgagg 500

                                                                       
Query: 301 gccccaaattaacctttttgtaactcactctgtgggaactaactgggatctgaaaagaac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gccccaaattaacctttttgtaactcactctgtgggaactaactgggatccgaaaagaac 560

                                                                       
Query: 361 aatattgaagaacagcaccttcaatgatataatcactttctactgggtacctcttcaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatattgaagaacagcaccttcaatgatataatcactttctactgggtacctcttcaaag 620

                                                                       
Query: 421 ctgcaccaccgtttaacatggtgaccctgaaggctgaccttccaggacacaatcctttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcaccaccgtttaacatggtgaccctgaaggctgaccttccaggacacaatcctttag 680

                                  
Query: 481 gggacataatcaaatctgctcta 503
           |||||||||||||||||||||||
Sbjct: 681 gggacataatcaaatctgctcta 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)