BAC Information

Click to search

BAC

Clone NameMSMg01-466N09
Chromosome12 (Build37)
Map Location 43,029,861 - 43,030,319
singlet/doubletsinglet
Overlap geneImmp2l
Upstream geneLrrn3
Downstream geneEG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466N09.T7 (MSMg01no466_n09.b1)MSMg01-466N09.TJ (MSMg01no466_n09.g1)
ACCAG550689AG550690
length747764
length of high quality
(start - end)
185 (130 - 314)459 (85 - 543)
definitionCHROMAT_FILE: MSMg01no466_n09.b1 PHD_FILE: MSMg01no466_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:29 2005CHROMAT_FILE: MSMg01no466_n09.g1 PHD_FILE: MSMg01no466_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATGATGAG
GGGCGGNAATCTCACCTAACGAAACCAAAGAGCAGAGAAGCACCTGAAAA
GATGTTCAACATCCTTAATCTTCACCCAAATGCAAATCAAAACAACACTG
AGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCACGTAA
CAGCAGATGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTT
TGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACTTTGNATTATTAGAGGATCCCGCAATACCTCTCCT
GAGCATATATCTTTAACATGCCCCAACCAGAAAGAAGAACACATGCTCCA
CTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGCACATTTACAC
AATGGAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGC
CAAAAGGATGGACCCTGGAGGTATCATCCTGAGTGGAATTACTCCCACCG
CACCAGACCCCCCCACCATATGTACCCCCCGGACAAACGGATTTTTTTTT
TTTTTTTTTTAGAAAACCCCCCACAACAAGAAATCACCTTGGCCGAACAT
CTGTATATTTCAATAACAAAGGTCGCCCCTTTGGCTGTACTACTTTA
NTTTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGTTGAATACCGA
TAACAATGAACTTTGGAAAAATATGAGAGTGTCTCAGACAGAAGTAGATG
GGATATATGTGATTTTCCTATGTATATAATCATTGCTGGAAAGCACTTTG
GGTAAGTGCACAGTAAGTCTCTCTGCTCTTTTAAATAGTATTTTATGTAT
TTTCCCATGTATTCCTTAAGAATTCCACACATGGGTACAGTGCAAAATGA
TAATATCCATTTCATCTACCCTATTATTCTCAATAATCTCCCAAACACAT
CCCATCCCAAAGTTCATGCCTATTTCATATCTTTTTTTTAATAACCTACT
AGGTCAAGTTAGCACTTCCTATGTATGCATGGGTGTCAGGCCATCCACCA
GGGCATGGACAACCTACAGTGGATGTCTACAGTGGCAACCTCAAAGAAGA
ATGAGCCTCCTTATTTTGGCAGTTATCAGTCCCAGTATCTCCTCAGCAAA
GGTCAGGGCCTCCAGAGCCCTTTCCTCATGGATGACCGAACATTTGACTA
GCTTGATTTTGCACAGGAAAGCACGGCCTCTTGAGATTTCCACTGGGGCA
CATGGAATCTCCTGGTGGCGGGCGAAACCTATTTTTCCTTTTATGGGCTC
GACACTCTCCTTCTCTATATTCCCTTGGCCTCTTTGGACCCCCTATGTGC
TGTCCCCCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_n09.g1 MSMg01no466_n09.g1 CHROMAT_FILE:
MSMg01no466_n09.g1 PHD_FILE: MSMg01no466_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:29 2005
         (459 letters)



>mm_chr12_43029661_43030519
          Length = 859

 Score =  833 bits (431), Expect = 0.0
 Identities = 452/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagttgaataccgataacaatgaactttggaaaaatatgagagtgtctcagacagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagttgaataccgataacaatgaactttggaaaaatatgagagtgtctcagacagaag 260

                                                                       
Query: 61  tagatgggatatatgtgattttcctatgtatataatcattgctggaaagcactttgggta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tagatgggatatatgtgattttcctatgtatataatcattgctgggaagcactttgggta 320

                                                                       
Query: 121 agtgcacagtaagtctctctgctcttttaaatagtattttatgtattttcccatgtattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgcacagtaagtctctctgctcttttaaatagtattttatgtattttcccatgtattc 380

                                                                       
Query: 181 cttaagaattccacacatgggtacagtgcaaaatgataatatccatttcatctaccctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 cttaagaattccacacatgggtacagtgcaaaatgataatatccatttcatctaccctac 440

                                                                       
Query: 241 tattctcaataatctcccaaacacatcccatcccaaagttcatgcctatttcatatcttt 300
            ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 441 aattctcactaatctcccaaacccatcccatcccaaagttcatgcctatttcatatctct 500

                                                                       
Query: 301 tttttaataacctactaggtcaagttagcacttcctatgtatgcatgggtgtcaggccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttaataacctactaggtcaagttagcacttcctatgtatgcatgggtgtcaggccat 560

                                                                       
Query: 361 ccaccagggcatggacaacctacagtggatgtctacagtggcaacctcaaagaagaatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ccaccagggcatggacaacctacagtggatgtctacagtggcaacctcaaagaaggatga 620

                                                  
Query: 421 gcctccttattttggcagttatcagtcccagtatctcct 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctccttattttggcagttatcagtcccagtatctcct 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)