BAC Information

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BAC

Clone NameMSMg01-466O08
Chromosome12 (Build37)
Map Location 49,448,259 - 49,448,679
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466O08.T7 (MSMg01no466_o08.b1)MSMg01-466O08.TJ (MSMg01no466_o08.g1)
ACCAG550735AG550736
length772776
length of high quality
(start - end)
463 (77 - 539)421 (86 - 506)
definitionCHROMAT_FILE: MSMg01no466_o08.b1 PHD_FILE: MSMg01no466_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:34 2005CHROMAT_FILE: MSMg01no466_o08.g1 PHD_FILE: MSMg01no466_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAGAGACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAT
GATCCGCGGAATTCTCACTTTCCCAATCAAATATGGCAACACAAACAGAA
CAGAAGAAACATTCCCACTACTCCAGCCAAACTTCTATTATAGTTCCAGG
GAAATGTTAATGATCCCCAAAAAACAGACAGGATCAGATCTCATGCAACT
CCCAGCAGGGTACTTGTTCTATCTGAGTTGCCCAACCCCCAGCATACCTC
CATCATGCAGGACTTTTTGGTGGTGGTAGAGCCTTGAATGGTGAGAGCAA
CCCTGTTGGAATGTTAACTGCCTTGTCAGCCATAAGTGCTTACTTACAAA
GTTTTGGCCTTAGTGGAAAAGTACTAGCTTAGTTGAGATTTCAGTGGGAA
AAAATTGAGGCCACTGTAGGAAAGTGCTACCCTCCAGTTAAGAACAAATA
GCTATAGATCTTGTGGACAGGTACCTAGCAACCCATTCTGTTCTTTTTCT
CCTGCTGAACTTTTTACCTAGCCAATATCCTGCTTTGGGGAACAAGTGTG
TTCCCCAGATACAAAGGAATTCCTGTGTCACCCCCCTCCCAATATTCTTG
CTTCTATGGGGATTAAACCTGCCTGGAAAAATAAAAAAATTTGTCTGGAT
TGATCCGGTATTTTCCTAATTTGGGAAATATTTTCTGGTCCCTCACCATC
TCTCTCTCCAGGTGGTGCTCTTTATATCTTGGTTTCTTCTGGGCCCTGGC
CTTCCCTAGTCCATTTTTATAN
AAAACCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAACTTTATACT
TCTAATATTCACCATTATTTTCCAAAAACATCCCAAAGGATGTATTATCC
CCAACTAACACTCAATTACTCTGTATTTTAATGGAGAAAACAGTTTCTCT
ACCAATAATTTCAACTGCAGGAATAAAGAAAACACATAAATTCTGTTTTG
TTTTGTTGTATGGCGGTAATTGGGGAGTCCTCAATCCTTTAGACATCTCA
CTGGCACAACTCAAGTCAGAATCTAATTCACTCACTAAGGACATAGAGAA
AATCAGAGATTTTTTTTTTAGGGTATTATTGCCTGAGTTGGGGCTCTGAT
TAATGTTTTGTCACCGTGATGAATAGAGAGAAAATGATGATAAAATCTGT
TTGAAATGAGTAATTATTTCATTTAGCTAATATTTATTTTATGTAAGACT
TTTTAGATTATGGCTATTTACCATCTAAAATTATATAATAATAGGCTTAA
AATGCATTTGATTACTTAAACTCTTCCATTATATTGCCTTCAATAGCACA
ATTTCTTTTTTACCTCAAATTTCCCCCTTAGAACAGCCACACTTTTCGTT
TCTAACAAAATGTGTTAATTCCTATAATTATAGTATATGTTTTACCACAC
TCCTCTGTTATTCTCCTGTCCATCAAACCACATCTCACATCCTCCATGGT
GGTGTCCTATACATTACATATAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_o08.g1 MSMg01no466_o08.g1 CHROMAT_FILE:
MSMg01no466_o08.g1 PHD_FILE: MSMg01no466_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:34 2005
         (421 letters)



>mm_chr12_49448059_49448879
          Length = 821

 Score =  783 bits (405), Expect = 0.0
 Identities = 417/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaactttatacttctaatattcaccattattttccaaaaacatcccaaaggatgtat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaactttatacttccaatattcaccattattttccaaaaacatcccaaaggatgtat 562

                                                                       
Query: 61  tatccccaactaacactcaattactctgtattttaatggagaaaacagtttctctaccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatccccaactaacactcaattactctgtattttaatggagaaaacagtttctctaccaa 502

                                                                       
Query: 121 taatttcaactgcaggaataaagaaaacacataaattctgttttgttttgttgtatggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttcaactgcaggaataaagaaaacacataaattctgttttgttttgttgtatggcg 442

                                                                       
Query: 181 gtaattggggagtcctcaatcctttagacatctcactggcacaactcaagtcagaatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaattggggagtcctcaatcctttagacatctcactggcacaactcaagtcagaatcta 382

                                                                       
Query: 241 attcactcactaaggacatagagaaaatcagagattttttttttagggtattattgcctg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcactcactaaggacatagagaaaatcagagattttttttttagggtattattgcctg 322

                                                                       
Query: 301 agttggggctctgattaatgttttgtcaccgtgatgaatagagagaaaatgatgataaaa 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agttggggctctgattaatgttttgtcaccgtgatgaaaagagagaaaatgatgataaaa 262

                                                                       
Query: 361 tctgtttgaaatgagtaattatttcatttagctaatatttattttatgtaagacttttta 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tctgtttgaaatgagtaattatttcatttagttaatatttattttatgtaagacttttta 202

            
Query: 421 g 421
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)