Query= MSMg01no466_o16.b1 MSMg01no466_o16.b1 CHROMAT_FILE:
MSMg01no466_o16.b1 PHD_FILE: MSMg01no466_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:36 2005
(239 letters)
>mm_chr12_92210664_92211302
Length = 639
Score = 435 bits (225), Expect = e-126
Identities = 238/245 (97%), Gaps = 6/245 (2%)
Strand = Plus / Minus
Query: 1 tgtgaataaagattaaggagactgatagatggtttcagacaatgatattgtctgagctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgtgaataaagattaaggagactgatagatggtttcagacaatgatattgtctgagctga 247
Query: 61 ttccttagagggtatgcatctcagaagaaaattaattccaaataagacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttccttagagggtatgcatctcagaagaaaattaattccaaataagacacacacacacac 187
Query: 121 aaacaca--cacacaca----cacatatatacaatacaatatgaatttgtatatatgtat 174
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acacacaaacacacacatacgcacatatatacaatacaatatgaatttgtatatatgtat 127
Query: 175 ataagtatatacatatatatgattatatatacatacatatatataatcattttagatgag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ataagtatatacatatatatgattatatatacatacatatatataatcattttagatgag 67
Query: 235 tatat 239
|||||
Sbjct: 66 tatat 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no466_o16.g1 MSMg01no466_o16.g1 CHROMAT_FILE:
MSMg01no466_o16.g1 PHD_FILE: MSMg01no466_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:36 2005
(501 letters)
>mm_chr12_92040413_92041313
Length = 901
Score = 911 bits (471), Expect = 0.0
Identities = 492/499 (98%)
Strand = Plus / Plus
Query: 3 ctgtgtacagggaagaatatcttccgcacttacagtgctttctttttcagagacaactat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctgtgtacagggaagaatatcttccgcacttacagtgctttctttttcagagacaactat 262
Query: 63 ggacagattcaacacaatgaacctggatgtcactgtattccataacacagtgattacaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggacagattcaacacaatgaacctggatgtcactgtattccataacacagtgattacaaa 322
Query: 123 aatggttacacaaatacgtcattaattatgccatgctatttggcagtttctgcaacgtat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatggttacacaaatacgtcattaattatgccatgctatttggcagtttctgcaacgtat 382
Query: 183 aatgatgtgtaacgctgataactaattggtagaagtgatcacgtgagttatgaagtctta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 383 aatgatgtgtaacgctgataactaattggtagaagtgatcacgtgagttatgaagcccta 442
Query: 243 tttgtaaaatgacatgcagatatgccttcagtgcttttaattttaatcctgggattcagt 302
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaagtaaactgacatgcagatatgccttcagtgcttttaattttaatcctgggattcagt 502
Query: 303 gaagactagagtgttgtcataactattagttagctggcttggtcgtgtacaagtcttgtg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaagactagagtgttgtcataactattagttagctggcttggtcgtgtacaagtcttgtg 562
Query: 363 ttgtaaaccacagatactacaagttcatgcttagagtagccattacatatccagacgaat 422
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 563 ttgtaaaccacagatactacaagttcatgtttagagtagccattacatatccagacgaat 622
Query: 423 gcattttgccacaccccttctaatcgttcagattttatatatcttcaagcctttcttcaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcattttgccacaccccttctaatcgttcagattttatatatcttcaagcctttcttcaa 682
Query: 483 tgttccctgaggctttggt 501
|||||||||||||||||||
Sbjct: 683 tgttccctgaggctttggt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
