BAC Information

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BAC

Clone NameMSMg01-467H19
Chromosome12 (Build37)
Map Location 69,985,843 - 69,986,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467H19.T7 (MSMg01no467_h19.b1)MSMg01-467H19.TJ (MSMg01no467_h19.g1)
ACCAG551184AG551185
length774741
length of high quality
(start - end)
244 (68 - 311)481 (67 - 547)
definitionCHROMAT_FILE: MSMg01no467_h19.b1 PHD_FILE: MSMg01no467_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:22 2005CHROMAT_FILE: MSMg01no467_h19.g1 PHD_FILE: MSMg01no467_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTC
TTCATTCCCTTGAAAGGTGGTGGGACAAGGAGGAAAGTCAAGCTCAGCAT
ACGAGAGGCCAAATCCACACACAGCCATTCTTGCTTATTCCCCAAAAATG
CTACAGAGACAAATATGGGCCCCGAGCAAATCCAGCAAAAGGGTACCCAT
ATTCCTAGAACACTGAATCATGAGCAAATAAAATGATTGTTTTACTCCAC
TAAAGCTTGAGTGATTCCTCATGGACCAGGAGGGGGGGAAATGCAGAGAC
ATTGAGGAAAAATTATATTAATTTTACCAGTGAAAAATTTTATTATACTT
TTCCTAAGAAATACTATGTGTTGTGTTTTTAAAAAAGAAAGAAAGAACCA
GAATATGTTTGGTAGAAATATGGTATGGTGGGGTGTAAGCCCTCTTCCTC
TCCTCCCTTTTCCTTTTTCCTTTCCTCCTTTTTTCCTTTCCCTCTTTCAC
CTCACCTCTTTCTTTTTTTCCCCTCATTCCCTTCTCTCATCTTCCTCCCC
TTTTTCTTCTTCTCATTTCCCTTTCCCTCCTGCCTTTCCTTTCTTTCTTT
TTACTCCTCTTTCTCTCCCTTTCTTCCTCTTCTTCTTTCTTTCCTTCCCC
CCTTCCCTTTTTCTTTTTTTTTCTCTCTCCCATCTCTTTCTTTTCCTCAC
TATTTTTTCTCTTACATCCATTTATCTCTCCTCTATCACTATTTTTTATC
CCTCCTTCCTCCCTTCATCCTATG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTATGTGTGTCAGTTTTGATGTGACTCTGTTTCA
TTGGCATCATCCACCACTCTGGCTCTCACAATCTTTCTGTCTCCTCTCCT
GCAGAGGTCCCTGAGCCTTGAGGGGAAGGGCTAGAAAAAGACATCCCATT
TAGGACGGAGTGCTCCCAAGCCTCTCATTCTCTGCACATTGTCCTGTTGT
GGATCTCTGTGTTGATTACCACCTACATCTAGAAGACACTTCTCTGATGA
GGTTGAGCGATGTTTCTGGTACAAAGAATTGCTATTGACTTCTATCATCA
TTCAGATCTTGTTAGGGGGCATATTGATAGGCTTCATCTACCTGTTTCTT
GAGGCAGAGTTTCTCAGTGACTTAGAACTCACCAAATAGACTAGCTAGGC
TGGCTGACTAGTGGTTTCCAGTGACCCTCCATCTCTGTCTTGTCAGTGCT
GAGGTTGCAAGTGTGTGCCACCAGCTACAGTGGTTTTTACCTGGGTTCTG
GGGAATCAAACTTAGGTCTTTGCATTTTGCAGCAGGCACTTTACTAACTG
AGCTATATCTCCTGCCCCGACTTGGTCTAAGGCTTTCATACTATTAAGAA
CGCGAGCTACGTAAGTCTCATTATGGCCTGTCTAGACTTCTATGACCACG
GCCCACCCACTGTTCCCCTGCTATTTTGTCCCTGTTAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_h19.b1 MSMg01no467_h19.b1 CHROMAT_FILE:
MSMg01no467_h19.b1 PHD_FILE: MSMg01no467_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:22 2005
         (244 letters)



>mm_chr12_69985643_69986285
          Length = 643

 Score =  414 bits (214), Expect = e-120
 Identities = 237/250 (94%), Gaps = 11/250 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgggacaaggaggaaagtcaagctcagcatacgagaggccaaatccacacacagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgggacaaggaggaaagtcaagctcagcatacgagaggccaaatccacacacagcca 260

                                                                       
Query: 61  ttcttgcttattccccaaaaatgctacagagacaaatatgggccccgagcaaatccagca 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttcttgcttattccccaaaaatgctacagagacaaatatgg-ccccgagcaaatccagca 319

                                                                       
Query: 121 aaagggtacccatattcctagaacactgaatcatgagcaaataaaatgattgttttactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagggtacccatattcctagaacactgaatcatgagcaaataaaatgattgttttactc 379

                                                                       
Query: 181 cactaaagcttgagtgattcctcatggaccagga--------gggggggaaatgcagaga 232
           |||||||||||||||||||||||||||||| ||         ||||||||  ||||||||
Sbjct: 380 cactaaagcttgagtgattcctcatggaccggggtgggggggggggggga--tgcagaga 437

                     
Query: 233 cattgaggaa 242
           ||||||||||
Sbjct: 438 cattgaggaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)