BAC Information

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BAC

Clone NameMSMg01-467N05
Chromosome12 (Build37)
Map Location 107,517,907 - 107,518,390
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404
Downstream geneLOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467N05.T7 (MSMg01no467_n05.b1)MSMg01-467N05.TJ (MSMg01no467_n05.g1)
ACCAG551441AG551442
length732758
length of high quality
(start - end)
160 (83 - 242)484 (72 - 555)
definitionCHROMAT_FILE: MSMg01no467_n05.b1 PHD_FILE: MSMg01no467_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:48 2005CHROMAT_FILE: MSMg01no467_n05.g1 PHD_FILE: MSMg01no467_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCTGAGGTGCGCGGNAATC
TGAAGAATACTTAAAGAGAGATGNANGGNNNCAAAATGGGTTTGATCTTT
GAACTATGGGTGGAGGACACAGTACTATTCCATCATATTTCAAAATCTGG
CTGCAGGGTCTGGAGAGATGGCTCAGAGGTTAGGAGCACTGACTGCTCTT
CCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACTTTCA
TCTGCAATGAGATCCGTTGCCCTCTTCTGGTGGGTCTGAAGGCAGCTACA
GCTATTTATTTTCTATTTTTAACTAAATAAATCTTTTTTAAAAATCTGGC
TGAATATCGAGAAGTCCACAATTTTGATTTATTCACAGAGAACGTGATCT
GTGCCTCCGAACCTCCCGCCTAGAATTTATACCTTTTGAGCTGTCATCAA
TAAAATTAACGGGAAAGGCGTTTTACAAAACCCCCACGACTAGTCCCATC
AGGTTTGTATGATATGACCGCTTAGAGTTACATATCCATGACCTGTTCCT
GTTGTTTTCTTACTTCCGTTTTATCTGTTTACCCGCTCCTTGCTGCCTTC
CATTTTGCGCTCCGATGATCCTCGCTCGCTCCGACATTGTTCTTCCCGCC
TTCCTTCTTTGATTGCCCATACTCTTCCAGCATCATTCTTCCTACCTCCT
GCCTCTTTTCTTTCCCTATGTCCCTCTCATTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGTTTCTCCAAAGCCCAGTGAGGAGTA
TGGCTCCCTAAAGTTGTCCTTCCCAGCTGGGAGCAGCCTGTGACAGGGAC
ATCACTTTAAACACCATCATGGTGACAGTGCTGAGGGACCACTCATAACA
GGAATAAATGACAACTTACAGTCCTCAAGGATCAAAAGAGACTGTCTAGA
GTCTACAAAAGCTCTACGATATGATACTGGGGTAGGAAGAGGTAGCTAAT
GTGGCATCAAGGCCTATTTTGTTGTTTAATATTCTGCAAAGAATAGAAGG
AAATGATATGGTCTTGTCCTCATGTGTGGATGAAGGCGAGAGTATATATT
TGCACACTTCCGTAAGTAGGCATGGAGGTCAGAGGTCACCCTCAGATGTC
GTCATTCAGGAGCCATCCATCTTGCTTGTTGAGACAAAATCTCCAACTGG
AACTTAGAACTCACCAAGGAGGCTGTCCAATTGGATTTAATTATCAACAT
GACACAGTGCAGAGTCATCCAAGAGGACTTATATAGAACCTCAAGTGAGG
GATTCCCCGATCAGTCTGGCCTATGGCCATGTGGAAGGGATGTTTGTCTT
GACTACTTTATTTGATGGTCGAATTACCTAGCCCCATTGTTGTGCATTCA
TTTATCCCTACTAACGTGTTATTTACCCCCAATTTCTCTTCTCCTCGAAC
CCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_n05.g1 MSMg01no467_n05.g1 CHROMAT_FILE:
MSMg01no467_n05.g1 PHD_FILE: MSMg01no467_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:48 2005
         (484 letters)



>mm_chr12_107517840_107518723
          Length = 884

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtttctccaaagcccagtgaggagtatggctccctaaagttgtccttcccagctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaggtttctccaaagcccagtgaggagtatggctccctaaagttgtccttcccagctggg 492

                                                                       
Query: 61  agcagcctgtgacagggacatcactttaaacaccatcatggtgacagtgctgagggacca 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 491 agcagcctgtgacagggacatcactttaaacaccatcgtggtgacagtgctgagggacca 432

                                                                       
Query: 121 ctcataacaggaataaatgacaacttacagtcctcaaggatcaaaagagactgtctagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctcataacaggaataaatgacaacttacagtcctcaaggatcaaaagagactgtctagag 372

                                                                       
Query: 181 tctacaaaagctctacgatatgatactggggtaggaagaggtagctaatgtggcatcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctacaaaagctctacgatatgatactggggtaggaagaggtagctaatgtggcatcaag 312

                                                                       
Query: 241 gcctattttgttgtttaatattctgcaaagaatagaaggaaatgatatggtcttgtcctc 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gccaagtttgttgtttaatattctgcaaagaatagaaggaaatgatatggtcttgtcctc 252

                                                                       
Query: 301 atgtgtggatgaaggcgagagtatatatttgcacacttccgtaagtaggcatggaggtca 360
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 251 atgtgtggatgaaggtgagagtatatatttgcacacttccgtaagtgggcatggaggtca 192

                                                                       
Query: 361 gaggtcaccctcagatgtcgtcattcaggagccatccatcttgcttgttgagacaaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaggtcaccctcagatgtcgtcattcaggagccatccatcttgcttgttgagacaaaatc 132

                                                                       
Query: 421 tccaactggaacttagaactcaccaaggaggctgtccaattggatttaattatcaacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tccaactggaacttagaactcaccaaggaggctgtccaattggatttaattatcaacatg 72

               
Query: 481 acac 484
           ||||
Sbjct: 71  acac 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)