BAC Information

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BAC

Clone NameMSMg01-467O07
Chromosome12 (Build37)
Map Location 6,771,073 - 6,771,313
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467O07.T7 (MSMg01no467_o07.b1)MSMg01-467O07.TJ (MSMg01no467_o07.g1)
ACCAG551493AG551494
length750733
length of high quality
(start - end)
240 (73 - 312)555 (73 - 627)
definitionCHROMAT_FILE: MSMg01no467_o07.b1 PHD_FILE: MSMg01no467_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:53 2005CHROMAT_FILE: MSMg01no467_o07.g1 PHD_FILE: MSMg01no467_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAATTTTGCGGCGCTAAACGACTCACTATTTTCAGAAAATCCGCGGAAT
TCTAGTGTTTACCATAGACAGCTATTTATTTATTTTTTGGCACAGTGTCA
TGTGGAATTGTTTTATGCTTCTCAGAACAAAGTAAAAATGTAAAGAGATC
ATCACTTAGCTGATAAACTGTCAGCTTCCAGACAAACACTGTAACTGATT
TACCCCTGTTCTTCCTCTAGGATAGCTATAGTTATTTGATATATCTTTTC
TCCACCTGATCCTGGATAGCTTGGGGAACATTCCGTTAGCTGTATGCAAA
TTGTTCAGGAAATTCTGATTGCCAGGCTATGCCCAGAGTGAGTTCTGTTA
TGAATATAAACTATAGAAATACTAAGCTATTCATCAGACAAGGGGCACTC
TACGGTCTTTGGAGTAACGCATTGACTGGATTACAGGATGGTGTTGGGAT
ATTTGTATGATACAAGAGCCCTGATATCCAATAATTGATCAAAAATAGCC
TGATAGGAGACTAATCAGAAATCCATCATAGCTTTGTTGCTTGGATACAT
GATGATAGTTTCACTTAAAGCACTTCGCTTTGCTAATTCTTCGAGATTGT
AATTATACATTCTAAAATCTTATCCTGCTTATTTCCTGAAGTATTAATTT
GACATAATACCCCGAATACCCTATTTCCTTTAATTTTAAATGCTACCCCC
TTTTTTACCTATTTCTTGATTTCATCCTTTCCCCACTTTATCTTCTTTTN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAAATTCTCACCTGAGGAATACCGAATGGCAGAG
AAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCTTTATATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTACTTATAAGAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCTATGATACCCAAGATATAATAATATAATTTGCC
ATACCCATGAAACTCCTGAAGAATGAATACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_o07.b1 MSMg01no467_o07.b1 CHROMAT_FILE:
MSMg01no467_o07.b1 PHD_FILE: MSMg01no467_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:53 2005
         (240 letters)



>mm_chr12_6770873_6771513
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttatttatttttt-ggcacagtgtcatgtggaattgttttatgcttctcagaacaaa 59
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttatttatttttttggcacagtgtcatgtggaattgttttatgcttctcagaacaaa 260

                                                                       
Query: 60  gtaaaaatgtaaagagatcatcacttagctgataaactgtcagcttccagacaaacactg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaaatgtaaagagatcatcacttagctgataaactgtcagcttccagacaaacactg 320

                                                                       
Query: 120 taactgatttacccctgttcttcctctaggatagctatagttatttgatatatcttttct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactgatttacccctgttcttcctctaggatagctatagttatttgatatatcttttct 380

                                                                       
Query: 180 ccacctgatcctggatagcttggggaacattccgttagctgtatgcaaattgttcaggaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacctgatcctggatagcttggggaacattccgttagctgtatgcaaattgttcaggaa 440

            
Query: 240 a 240
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)