BAC Information

Click to search

BAC

Clone NameMSMg01-468I15
Chromosome12 (Build37)
Map Location 32,396,309 - 32,396,583
singlet/doubletsinglet
Overlap geneGpr22
Upstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081
Downstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468I15.T7 (MSMg01no468_i15.b1)MSMg01-468I15.TJ (MSMg01no468_i15.g1)
ACCAG551987AG551988
length786850
length of high quality
(start - end)
279 (48 - 326)89 (76 - 164)
definitionCHROMAT_FILE: MSMg01no468_i15.b1 PHD_FILE: MSMg01no468_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:47 2005CHROMAT_FILE: MSMg01no468_i15.g1 PHD_FILE: MSMg01no468_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCG
GAATTCCTACAAAATTCGCAATAAAACACAGTTACTCCACTGTTACCAGG
AAAAAAAAAATTCATGTCAGAATTGTCAATGACATCATGTATCAATTTGT
GGAAAACTACCATGGTGAGCCCAAAGGCCCATAAAGCAACAGTAAACAGG
TAGGTCAGAGGATGCATGGAGCCCCACAGAAGAAAATCCATGTTTTCTAT
CATTGCTGTTGTACTTGACAAGTGTGCTTTATTTAATTATAAATGTGATG
TGACAAAACAAAGACCTGATGTTCAGTCTTTCAGTTCAGAAAATTTAGTT
CTCTTAGAATTGCCCATTTTCACAGGATTTCAGTAAGCTGAGCCATTTTA
TATAAATATGTGCCTGGTAATACCCATTAAAATGAAATTGCTGTCATATG
TTTCTGAAATATGAATAACATGCATAAGGTTGTCAAAGGTAACATCAATT
TAAATATCATTGTGAATTTTGAAAACCATTAATTTTTATACTTCACAATG
AAGTATTTTGCTGTTAAAATGCTATACCTGACATGTGAAATATACTTGGA
TGTATGAATTCATATGTTAAGCTGAGAAACCTCATTGCAAAAATTTCAGG
CCCGAAAATCATATATCTTTTTTATTATTGACTCTAAATTCCCAAAATAT
TAATCTGCAGGAATTAATCAAACCTGTTTATTTTCTAAACTTTTTTTTTC
CAATTATTTCCCTGGTTGGTTGCGAACAACAAATTT
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCCGAATTCTCCTCACAGAGCCTGACTGCAGAGCTT
ATGCTCAGTTGCCAAAAAGGAGGAGGAGGAGGAGCAAGAGGAGGAGGAAG
AGGAAGAGGGAATAAATTTCCCTGTTTTCCGATCCCCTTCTCCAGTCTGT
GTGACCCATTCCTTCACTTCTCTGCTGCCTTACCCCCTTCTCCCCTGTAC
AACCTTTTTTTTCCTCCCCATTCTCTGTGACCTCTCTCCTATCCCATCCT
GTAATGTTACTGCTCCTCCATCTTTTCTCTTTTCTCCCCTTTGCCCCCTT
CCTCTTCTTCTCTTTTTCCCTCCTCTCTTTTTTCTCCTTCTCTTCTCTTT
TTCTTCTTCTTTTTTTCCCCCCCCCTCCTTTCCTTCTCTCTCCCTTTTTT
TTCTTTTTCCCCCTCTCTCTTCTTTTCTTTTTTTCTCTTTCTCTCCTCCC
GTTCTCTTTTTTTTCCTCTTCTCTTCTTTCCCTCTTTTCTCTTTTTCTCT
CCCCCTTTTCCCCCTCTTCTTTTCCCATTCTTTTTCTTATCTTTCCTTTT
TTTTTTTTCTCTCTTTCCTTCTTTCTCCTTTTTTCTTTTTCTTTCACTTT
TTTCTTCTCTTTTCTTTTTTTTCTCCTCCTTCTTTCTTCTTTTTCCTTCT
CTTTTCTTTCTTGTTTCTTTCTCTCCCCCCTTCCTCCTCTTCCTCCTTCT
TTTTTTCTTTCCTCTCCTTTTTCCCCCTCCCTTCTTTTGTTTCTTCCTCT
TCTTCTCTCTTCTCTCTTTCTTTCCTTCCTCCTCTTCTTTCCCTTCTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_i15.b1 MSMg01no468_i15.b1 CHROMAT_FILE:
MSMg01no468_i15.b1 PHD_FILE: MSMg01no468_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:47 2005
         (279 letters)



>mm_chr12_32396106_32396783
          Length = 678

 Score =  484 bits (250), Expect = e-141
 Identities = 270/278 (97%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcctacaaa--attcgcaataaaacacagttactccactgttaccaggaaaaaaaa 61
           |||||||||||||  ||  | |||||||||||| |||||||||||||||||| |||||||
Sbjct: 478 gaattcctacaaaacat--gaaataaaacacagctactccactgttaccagg-aaaaaaa 422

                                                                       
Query: 62  aattcatgtcagaattgtcaatgacatcatgtatcaatttgtggaaaactaccatggtga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aattcatgtcagaattgtcaatgacatcatgtatcaatttgtggaaaactaccatggtga 362

                                                                       
Query: 122 gcccaaaggcccataaagcaacagtaaacaggtaggtcagaggatgcatggagccccaca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcccaaaggcccataaagcaacagtaaacaggtaggtcagaggatgcatggagccccaca 302

                                                                       
Query: 182 gaagaaaatccatgttttctatcattgctgttgtacttgacaagtgtgctttatttaatt 241
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagaaaatgcatgttttctatcattgctgttgtacttgacaagtgtgctttatttaatt 242

                                                 
Query: 242 ataaatgtgatgtgacaaaacaaagacctgatgttcag 279
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataaatgtgatgtgacaaaacaaagacctgatgttcag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 678
Length adjustment: 9
Effective length of query: 270
Effective length of database: 669
Effective search space:   180630
Effective search space used:   180630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)