BAC Information

Click to search

BAC

Clone NameMSMg01-469A19
Chromosome12 (Build37)
Map Location 28,657,970 - 28,733,714
singlet/doubletdoublet
Overlap geneLOC669327
Upstream geneSox11, LOC100043009
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469A19.T7 (MSMg01no469_a19.b1)MSMg01-469A19.TJ (MSMg01no469_a19.g1)
ACCAG552378AG552379
length767802
length of high quality
(start - end)		556 (67 - 622)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no469_a19.b1 PHD_FILE: MSMg01no469_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:29 2005CHROMAT_FILE: MSMg01no469_a19.g1 PHD_FILE: MSMg01no469_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,733,159 - 28,733,714)(28,657,970 - 28,658,435)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAAT
TCCCAATTTTCCGGCTATTTGTCCTTCTAAAACGTCTCTTCTTCTCCTGT
CTTCACATCTGATACTACAGTTGCTAAGAAAAACAAAGCAAAACAGAATG
AAAAGTAATGTATTCACACCAAGTCCACTACCTAGGTAGGTGATGTGTTT
ACCATTAAGTTAAATCTCAGGCCAAATACAGACTGTCAGTTTAGGGGAGA
GGAGATGGAAGAATACAGGGGAAAAAAGAGGTACCATGCAATGTAATTGT
GAATGTTGTGCCAGGTTCATATACACTTATGCCTTAGTTCATTACTAAGT
GAGATAATGGACATTACCAAACTCAGTGGAGGAGAATCAGGTTAGAGAAC
TTCAGTAAGCTGGCACAAGGCAGGGTATAATGTGCATGCATGCCTGCCAG
GCGCAGAGAGATATTGTGTAGAATTTTCTGCACCTGGAGTTTAAGTTTCA
CGGCAACCAAAGTAAAGATGAAATATGACAATTATCTGAATTAATTTCAT
GAGGCTGTGACATCCAGTCACGGAGAAGTATGTCTGGCTTTGATCCTAAT
CTCATGTCCGCTCTCTCTAGCAGATCTTGTAACAAGAATGTTTGTGATGT
GGATGACAATAGTCAGCAGCCTTCAGAGAGGCTGGCGATGATCGGGTGTA
CAGCTGACGTGGGTTTATTTACAGGAGAGCTGTCTAGCCAAGCTTAAACT
TGCAGTCAGCTCTGGGN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGATGATTTGTTGGTCTTAAACAAC
CGGGCAAGTGAGATAACCAAACAAATTTTGCTCAAGGTATGTCTCAAAGA
GAGTAGCTTGAAGAGTAGAGACACAAACAAGGAGTTGGTAAGCTTTCTCA
CAACCTGTGCTTTAGATGCCCTTGCCCCTCCACATACCTGCACCAGGACC
TGCCCATCCTTCTGCTCAGCAAGAGCTAGTGCAACGTCCCTGACTGTTCT
GAATTCTTTCTTTGCCCTCTGTCCCGCAGCTGGTTTGTCTCCATCTGCTT
GCATGTGTGTCCTCCAAACATGCCCTGACCTCCCAGCAGAGGCAGATATC
TCCTGTACCCTCCCCTTTCTCAATCCTGAGTCTTGTGTTTTACTTTGTTC
TCAGGATGGGGCTTCCTAGTGAACCCTTCCCCATCCTTACAGCCTCCTCT
CCAGCAGGTGCTCAACTGAAAGAGCTTTTGTCAAAGCCACCAGAGGCCAC
CAGCCATGTCCCAGAACTTAGTGAAAGACATTTCAAAGTTCTGAGCAACA
GCTTGCCACTCTGTTCTCTCAGCAGGGTTTGACAGAAAGGGGCATCTCAT
CCTTCCATCTCCATTTTGGGAGCCCTGAATTTAAAGGGGGGCCCCCCTTC
TAAAAATAATGTTTCCGGGATTCTATCATTTTCCCCCCCGGTTTTTTTTG
CTTTGGCTTTTCCTCCCAATTTTTCCCCTCAAATTTTCTGTGGAAAAATA
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_a19.b1 MSMg01no469_a19.b1 CHROMAT_FILE:
MSMg01no469_a19.b1 PHD_FILE: MSMg01no469_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:29 2005
         (556 letters)



>mm_chr12_28732959_28733914
          Length = 956

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgtccttctaaaacgtctcttcttctcctgtcttcacatctgatactacagttgcta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 756 atttgtccttctaaaacgtctcttcttctcctgtcttcacatctgagactacagttgcta 697

                                                                       
Query: 61  agaaaaacaaagcaaaacagaatgaaaagtaatgtattcacaccaagtccactacctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agaaaaacaaagcaaaacagaatgaaaagtaatgtattcacaccaagtccactacctagg 637

                                                                       
Query: 121 taggtgatgtgtttaccattaagttaaatctcaggccaaatacagactgtcagtttaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 taggtgatgtgtttaccattaagttaaatctcaggccaaatacagactgtcagtttaggg 577

                                                                       
Query: 181 gagaggagatggaagaatacaggggaaaaaagaggtaccatgcaatgtaattgtgaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gagaggagatggaagaatacaggggaaaaaagaggtaccatgcaatgtaattgtgaatgt 517

                                                                       
Query: 241 tgtgccaggttcatatacacttatgccttagttcattactaagtgagataatggacatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgtgccaggttcatatacacttatgccttagttcattactaagtgagataatggacatta 457

                                                                       
Query: 301 ccaaactcagtggaggagaatcaggttagagaacttcagtaagctggcacaaggcagggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccaaactcagtggaggagaatcaggttagagaacttcagtaagctggcacaaggcagggt 397

                                                                       
Query: 361 ataatgtgcatgcatgcctgccaggcgcagagagatattgtgtagaattttctgcacctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ataatgtgcatgcatgcctgccaggcgcagagagatattgtgtagaattttctgcacctg 337

                                                                       
Query: 421 gagtttaagtttcacggcaaccaaagtaaagatgaaatatgacaattatctgaattaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagtttaagtttcacggcaaccaaagtaaagatgaaatatgacaattatctgaattaatt 277

                                                                       
Query: 481 tcatgaggctgtgacatccagtcacggagaagtatgtctggctttgatcctaatctcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcatgaggctgtgacatccagtcacggagaagtatgtctggctttgatcctaatctcatg 217

                           
Query: 541 tccgctctctctagca 556
           ||||||||||||||||
Sbjct: 216 tccgctctctctagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no469_a19.g1 MSMg01no469_a19.g1 CHROMAT_FILE:
MSMg01no469_a19.g1 PHD_FILE: MSMg01no469_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:29 2005
         (466 letters)



>mm_chr12_28657770_28658635
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgatgatttgttggtcttaaacaaccgggcaagtgagataaccaaacaaattttgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgatgatttgttggtcttaaacaaccgggcaagtgagataaccaaacaaattttgctc 260

                                                                       
Query: 61  aaggtatgtctcaaagagagtagcttgaagagtagagacacaaacaaggagttggtaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtatgtctcaaagagagtagcttgaagagtagagacacaaacaaggagttggtaagc 320

                                                                       
Query: 121 tttctcacaacctgtgctttagatgcccttgcccctccacatacctgcaccaggacctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctcacaacctgtgctttagatgcccttgcccctccacatacctgcaccaggacctgc 380

                                                                       
Query: 181 ccatccttctgctcagcaagagctagtgcaacgtccctgactgttctgaattctttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatccttctgctcagcaagagctagtgcaacgtccctgactgttctgaattctttcttt 440

                                                                       
Query: 241 gccctctgtcccgcagctggtttgtctccatctgcttgcatgtgtgtcctccaaacatgc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccctcagtcccgcagctggtttgtctccatctgcttgcatgtgtgtcctccaaacatgc 500

                                                                       
Query: 301 cctgacctcccagcagaggcagatatctcctgtaccctcccctttctcaatcctgagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgacctcccagcagaggcagatatctcctgtaccctcccctttctcaatcctgagtct 560

                                                                       
Query: 361 tgtgttttactttgttctcaggatggggcttcctagtgaacccttccccatccttacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgttttactttgttctcaggatggggcttcctagtgaacccttccccatccttacagc 620

                                                         
Query: 421 ctcctctccagcaggtgctcaactgaaagagcttttgtcaaagcca 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctctccagcaggtgctcaactgaaagagcttttgtcaaagcca 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |