BAC Information

Click to search

BAC

Clone NameMSMg01-469F24
Chromosome12 (Build37)
Map Location 13,678,681 - 13,678,924
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396
Downstream geneLOC238091, EG633789, LOC668481, AW125753, LOC100043256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469F24.T7 (MSMg01no469_f24.b1)MSMg01-469F24.TJ (MSMg01no469_f24.g1)
ACCAG552626AG552627
length787834
length of high quality
(start - end)
544 (73 - 616)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no469_f24.b1 PHD_FILE: MSMg01no469_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:56 2005CHROMAT_FILE: MSMg01no469_f24.g1 PHD_FILE: MSMg01no469_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAAGGCGCGGAATT
CCTAAACCTTTTCACAACTTCAGTAAAGTAGCTGGATATAAAATTAACTC
AAACAAGTCAATGGTCTTTCTCTACACAAAGGATAATAAGACTGAGAAGG
AAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATAC
CTTGGCGTGATTCTAATTAAGGAAGTGAAAGATCTGTATGATAAGAACTT
CAAGTCTCTGAAGAAAGAAATCAAAGAAGACCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCTTTTTCAATATAGTAAAAATGGCTATCATT
CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA
ATTCTTCAGTGAATTTGAAAACGCAATCTGCAAATTCATCTGGAATAACA
AAAAACCTAGGATAGGAAAAACTCTTCTCAATGATAAATGAACCTCTGGT
GGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAA
AACTGCACAGTACTGGTAACCAGACAAGTAGACCAATGAAATAGAATTGA
AGACCCAGATATGAACCCACACACCTATTGTCACTTGATCTTTCACAAGG
GAGCTAAAAACATCCCGTGTTAAAAAGACAGCATTTTCACCAATGGTGCC
GGCCCAACCGTGGGTATCATGTACTAAATGCGAATGAGCCATTCCTATCT
CCTTGGATAAGTTCAAACCAAGGGGATTCGGAACCCC
TGCTGCGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGCATTGCATGGCAGGTTCCCAATCAATG
GTGGTTGTTATAGTTTGTGGGAGGTCTGGCTTTGAACTAGTGAGCTATTT
TCCAGAGGGAACTGTAGAGGAGGAGCAATGGTACAGAAGGAGAATGGACC
TCAGGAGAGGTACTGAGAGCAGAGGTGAGGAAGATGCTGGGGATGACACC
AGTTTAGCAGGGCTCAGAGAAAGGAATCAGCTTATCAGAAAGGGAGCTGT
AGGATTCATTATGGCAGAGATTTTTTTCTTGCTGCTATACTCTCAGGTTC
TGACACTATTCTATACTGACTCAACATATGTTTTTATATTAAGAAACTAC
TGGATGAATGACTGGCAGGTTCAACGTCAGAACATGCACATTTGTGATAC
GAAATTGGCTCTGAGACCGCTGGATACATGCCATACTGAGCTGCACACTT
GTACCTGATCTGCTACCTTTCCCGTTCCAGTTCTATCCTCTGTATTTTTG
ATTATGTTCAATTCCCTACTCCTTCCATCCCTATTTTTTTCTTTTTCCCT
CCCCCTCCTTTATTCCTTTTTTCTCCTTCTCTTCTTACTCCCTTTGTCTC
CCCTTTTCTTTTTTTTTTCCCCCCCTTTTTTTTCCCTTTTTTTTTTCCCC
ACCTTCTTCTTTTCTTTCCTCCTCCTTTTTTCTTCTTTTTTTTCCCCCTC
CACACTCTTTTATTTCTCACTTCCTCTCTCTTTTCTCCTTATCCCTCTAT
CTTCCCTCCCTCTTTATATCCAACCCCTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_f24.g1 MSMg01no469_f24.g1 CHROMAT_FILE:
MSMg01no469_f24.g1 PHD_FILE: MSMg01no469_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:56 2005
         (246 letters)



>mm_chr12_13678481_13679126
          Length = 646

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcattgcatggcaggttcccaatcaatggtggttgttatagtttgtgggaggtctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcattgcatggcaggttcccaatcaatggtggttgttatagtttgtgggaggtctggc 260

                                                                       
Query: 61  tttgaactagtgagctattttccagagggaactgtagaggaggagcaatggtacagaagg 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct: 261 tttgaactagtgagctattttccagagggaactgtagaagaggagcaatggtgcagcagg 320

                                                                       
Query: 121 agaatggacctcaggagaggtactgagagcagaggtgaggaagatgctggggatgacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 agaatggacctcaggagaggtactgagagcagaggtgaggaagattctggggatgacacc 380

                                                                       
Query: 181 agtttagcagggctcagagaaaggaatcagcttatcagaaagggagctgtaggattcatt 240
           ||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 agcaaagcagggctcagagaaaggaatcagcttaacagaaagggagctgtaggattcatt 440

               
Query: 241 atgg 244
           ||||
Sbjct: 441 atgg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)