BAC Information

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BAC

Clone NameMSMg01-469L13
Chromosome12 (Build37)
Map Location 38,622,278 - 38,622,520
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469L13.T7 (MSMg01no469_l13.b1)MSMg01-469L13.TJ (MSMg01no469_l13.g1)
ACCAG552890AG552891
length760822
length of high quality
(start - end)
236 (80 - 315)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no469_l13.b1 PHD_FILE: MSMg01no469_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:23 2005CHROMAT_FILE: MSMg01no469_l13.g1 PHD_FILE: MSMg01no469_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGGATCCGCG
GAANNCAGTATTAACCATGACTTAATGGACCAAACTTAACTTTTCAATGT
AACACAGCATAACTTCAAGTCTTTTTTTTTTCCATTTTTATTAGGTATTT
AGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCA
CCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGACCTGGCGTTCCCC
TGTACTGGGGCATACAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGC
GATGGCCAACTAGGTTACTTTTTGATACATATGCAGCTAGAGNCAAGAGC
TCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGA
TCCCTTTAGCTCCTTGGGTTCTTTCTCCAGCCCCTCCACTGGGAGCCCTG
CGATCCATCCATTAGTTGACTGTGAGCATCCACTTGTGTTTGCTAGGTCC
CACCACAGTCTCCCATGAGATAGCCACCTCTGGGTCCTTTCCACAAAATC
TTGCCACGGCATGACATGTCGCCCGCGTTTGCACGCTCCATACGTTCTTG
CCTCCCTGTACACGGTCTTTTTCTCTCCGGTTTTCCCCTTTTTTCCCATC
TTCTTTTTTTTGTCCTCGCAAATCTATTCCCTGTGCTGCTCTCTCCCCTA
CCTCCATGCTATTGTTCCACCCGTCTGCCTCTCTCACTTTCCTCTCCCCC
TCTCGTCTCN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCATTGGTTCTATAAACTAG
TCAGAACAGAAAGGCTGGTTCAGGCTTCACAACTGGCAAGAATGAGGTCC
ATGACTCAGATTGTTTACCATTCAGACTGGTTTTCTAGCAAACTACGAAA
TAATCCTTACACAGAATAAACACAAGACTAAGATTGGAAGTAAGTGGATC
TTCTCAGGGGCTTTGCTTTATTCCACACTAGGTGTTTTGTTTTGTTTTGT
TTTGTTTTGTTTTGTTTTGTTTTTTTTTGTCCCGCCTCCCCCTCCTCCTC
TTCCCCCTTTCTTCTCCTTCTTTTTCTTTCTCCCCTTTCTCTTTCCCCCT
TTTTTCCCCTTTTTTTCTTCCTCCTCTTTTCCTCTTTTCTCTTTTTCCCC
TTCTTCCTCCTCCCCTTCTTCTTTTTCCTCTCTTATATTTCCCCTCCCCC
TTCCTTTCTCTCTATTTTCCCCCCTTCCTATTTCTATTATATATTATTCT
TTACTCATATTCCCCCCCCCAACCTTTCTTCTATATTTACTTTTATCTCC
TTCTCTTCCCATCTTTCACTCCCTTCCCCCCCTATTCCCTCTCTAACCCT
TTTTTACCCCCCTTATTTTTTTCCCTTTTTCCTCCCTATCCCCATTTCCC
CCGCTCTTTTTCCCTTCCCCCTTCCGTCCCGTGCTCTATTTCTCTTCCCC
CCTTCCCTTCCCTTTCTTTTATTTTTTCCCTTTCACCCGCTTTCCCCACC
TTTTTTTTTTTCTCTTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_l13.g1 MSMg01no469_l13.g1 CHROMAT_FILE:
MSMg01no469_l13.g1 PHD_FILE: MSMg01no469_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:24 2005
         (243 letters)



>mm_chr12_38622116_38622758
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcattggttctataaactagtcagaacagaaaggctggttcaggcttcacaactggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttatcattggttctataaactagtcagaacagaaaggctggttcaggcttcacaactggc 346

                                                                       
Query: 61  aagaatgaggtccatgactcagattgtttaccattcagactggttttctagcaaactacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aagaatgaggtccatgactcagattgtttaccattcagactggttttctagcaaactacg 286

                                                                       
Query: 121 aaataatccttacacagaataaacacaagactaagattggaagtaagtggatcttctcag 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 aaataatccttacacggaataaacacaagactaagattggaagtaagtggatcttctcgg 226

                                                                       
Query: 181 gggctttgctttattccacactaggtgttttgttttgttttgttttgttttgttttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gggctttgctttattccacactaggtgttttgttttgttttgttttgttttgttttgttt 166

              
Query: 241 tgt 243
           |||
Sbjct: 165 tgt 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)