BAC Information

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BAC

Clone NameMSMg01-470E24
Chromosome12 (Build37)
Map Location 45,557,948 - 45,558,415
singlet/doubletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E24.T7 (MSMg01no470_e24.b1)MSMg01-470E24.TJ (MSMg01no470_e24.g1)
ACCAG553344AG553345
length761765
length of high quality
(start - end)
376 (78 - 453)471 (73 - 543)
definitionCHROMAT_FILE: MSMg01no470_e24.b1 PHD_FILE: MSMg01no470_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:10 2005CHROMAT_FILE: MSMg01no470_e24.g1 PHD_FILE: MSMg01no470_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATCCGCGGAATT
ANCAACACTTGCGCATACAAGCCTTCACAGGACCAAGGGCCTTGACTCCC
ATTGATGCCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATG
GGTCCCTCCATGTGTACTCTGGTTGGTGGTTTAGTCCCTGGGAGATCTGG
GGTACTAGTTGGTTGATAATGTTGTTCTTACCATGGGGTTGCAAACCCCT
TCAGCTCCTTCAGTCCTTTCTCTAACTCCTCTACTGGGGACCCCATGCTC
AGTCCAATGGTTGGCTGGCTTTTTTTACCTCTGTATTTGTCAGGCTCTGG
CAGAGCCTTTCAGGAGACAGCTATATCAGGCTGCTGTCAGCAAGCACTTG
TTGGCATCCACAATAGTGTCTGGGTTTGGTGACTGTATATGGGATGGATC
CCCAGGTAGGGCAGTCTCTGGATGGTCTTTCCTTCAGTCTGTGCTCCATA
CTTTGTCTCCATATTTGCTCCCATGAGTATTTAACTTCATCACTTTTATC
CCTTCATGTTTGTGACTGCTATACATATGCCTTTGTGATACCCCTGAATT
TGCGCATAACAATACTACGGCTTTTATTACACATATAGTGCTTTACCCCT
GCATAGCACACATCGATGATTTACCTAAGCGTCCTCGCCTTCGTTAAACT
TTAAGTGGCCCGCTTTCCCTGACACCATTGCCACTACTATGGCCAATATT
TCCCCTTCCCC
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTGTTTAATTAAACCTATGAAGTACA
GAAGCAGACATCTGAACTATAGGGGCCTTATAATTCTTTAAGAGAGCTCT
TGTTGGTTGAGATCTAGTTCTCTGAACTATGTTCCTGATTTCCACTTAAG
ATATTTTTCACCAAGTGAAATAGACTACAATCGGTGGCCTTTCAGAAGGC
CACCCAGGCCAAGCATGGTCTGCTCTGGAGTTGGTAATCCTATTTGACAC
AAATGGAGTGGGATGTGAGGTTTTTTTAGTGGGAAACAGGGGCTAGGAAA
GGCCTTGCCAGACAGAAGGCATACACTTAAACTCTCAGAACTGACCTTTC
CCTTATTTTGAGAAACAAGAAAAACAGGATGCCATATTTTCAGATTTCTG
ATATTTGTTCACATGTAATAGGAATGCTTTTTAACCTTCAGTTACTTCAG
GAATTTTTTTATGAGCAGTGCTATTTTCTGTGATTAAAGACAAATGTTTG
ACAAAATAGCACAAATATTACTTCCACACAATGACGAGAGATCAAGGCTA
GGCCCTTCTCTGCGTATTTGACCTATTCTCTTTGACAAGTGAAATGATAA
ATGTCTCTACATTTCGTTTCTCCCTTCCCCGTCCTTTGTCTTGCTCTCCC
GACGAACATCCATTAGACCTGATTGTTATTATCACACCATTCTCTTATTT
CTATGGCATCATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e24.g1 MSMg01no470_e24.g1 CHROMAT_FILE:
MSMg01no470_e24.g1 PHD_FILE: MSMg01no470_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:10 2005
         (471 letters)



>mm_chr12_45557748_45558618
          Length = 871

 Score =  845 bits (437), Expect = 0.0
 Identities = 460/473 (97%), Gaps = 10/473 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgtttaattaaacctatgaagtacagaagcagacatctgaactataggggccttata 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 668 atttgtttaattaaacctatgaagtacagaagcagacatctgaacaataggggccttata 609

                                                                       
Query: 61  attctttaagagagctcttgttggttgagatctagttctctgaactatgttcctgatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 attctttaagagagctcttgttggttgagatctagttctctgaactatgttcctgatttc 549

                                                                       
Query: 121 cacttaagatatttttcaccaagtgaaatagactacaatcggtggcctttcagaaggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cacttaagatatttttcaccaagtgaaatagactacaatcggtggcctttcagaaggcca 489

                                                                       
Query: 181 cccaggccaagcatggtctgctctggagttggtaatcctatttgacacaaatggagtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cccaggccaagcatggtctgctctggagttggtaatcctatttgacacaaatggagtggg 429

                                                                       
Query: 241 atgtgaggttttttt-----agtgggaaacaggggctaggaaaggccttgccagacagaa 295
           ||||||||     ||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgtgagg-----ttcaaagagtgggaaacaggggctaggaaaggccttgccagacagaa 374

                                                                       
Query: 296 ggcatacacttaaactctcagaactgacctttcccttattttgagaaacaagaaaaacag 355
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 373 ggcatacacttaaactctcagaactgacctttcccttattttgagatacaagaaaaacag 314

                                                                       
Query: 356 gatgccatattttcagatttctgatatttgttcacatgtaataggaatgctttttaacct 415
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gatgccatattttcagttttctgatatttgttcacatgtaataggaatgctttttaacct 254

                                                                
Query: 416 tcagttacttcaggaatttttttatgagcagtgctattttctgtgattaaaga 468
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcagttacttcaggaatttttttatgagcagtgctattttctgtgattaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)