BAC Information

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BAC

Clone NameMSMg01-471A14
Chromosome12 (Build37)
Map Location 47,816,263 - 47,816,954
singlet/doubletsinglet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471A14.T7 (MSMg01no471_a14.b1)MSMg01-471A14.TJ (MSMg01no471_a14.g1)
ACCAG553898AG553899
length7411,483
length of high quality
(start - end)		695 (47 - 741)---
definitionCHROMAT_FILE: MSMg01no471_a14.b1 PHD_FILE: MSMg01no471_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:08 2005CHROMAT_FILE: MSMg01no471_a14.g1 PHD_FILE: MSMg01no471_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTAGTCCTCCTGTCACNANACGACTCACTATTTCGAGAGGAGCCGCG
GAATTCAACACTTTGCTTTAATTTTCTCAACCTCACTAAATGACATGGGA
TCATAGGAGGGGTCACATACATTTAAACATCTGTTCTGTATAAACCTTGG
GCCAACACTCAAGTTCATGAATAAATAGATGTTAAATCTAGAGTCCCTTT
CTCCCATTATAAGTTTACTCCATACTAAAACCAGATCCTGAATGTCCATG
TTCATTAAGAGAGAATGAATCTGAAGTACTGGATAATATCTTGTTGAGAT
ACAAATCCTCATGAGGTGTTTAACTAGGGCAAAGAGGCAGATGTAACAGC
AGCAATATGAGGCTCATATTCTGTAATAACTTAGATTCAGATGATCTGTC
AAAATTTTATTGCTATTCTTTAGGATTTTCATATATTCTTAATATCTATT
AATAATTGATGCAACTCATATTCATCAAAATTGTCCTTAATAATTTGGTT
GCTTTTCCTTTCTTCTATGAATGAAATAAATAATTTAAAACTCTGAATTA
TATTTCTGTGCTTTAAATATCTTGAGGTTTTATCATTAAGCATGATGATT
AAATAAGTTACGTTTTAGTAGTTTACGTAGGTGAGAATTAATCAAACATG
TACTACCAAGGATAAGCTATGGCAGCGTCACTCCAAAGACTTAGTGTATT
TTCTAGGGTAAAATATTGGATGTACTAATGACAGAAAATGT

GTCCTGCTCTCATTCTCCGGNTGATGATATTTAGTAAAGAATAGTGCAAA
TGTGACTCTTTCACACGAAGGCATTTGTGCGCGCGCTCGTGCCACGCCGA
GGCATTTCGCGCGGAGGAGTTATGCTGCGTCACGGTGTATCGCGGCCGCG
CTGCTTGAACGATCGGACGACACGAGGAGTCGCCGCACGGATGCGACATT
TACACCCATTNCACGCACTACTCATATCATCGTATATATATTCACCGCTC
TTGACTCTGTTGTCTCTCTGCTCGCGTCTTATTTCGTTCCCGTCTCGACC
GTCNCGCATTTTATAATCGTGGTAGAGACAGTCGCGAGCGCGTAGCTTCT
GACGGCGGCGGGCGCACTACCACAAGCGCATGAGGTGACGGTATAGTGCG
CGGTAACGCACGTATCCGGCGTGGCGCGATGACGCACTCATTATTACGTC
AGGCGCGTACGTACGTGTGTATGCTCACTACATAGAGGTCGGCCGTCGTG
ACAGAGCGCTGGCTCGCGCGTTAGCGCTTACAGAGGCTAGCTCAATTACT
GGAGCGCTACCACGCGCCAGCTCGTATCTCCGGCGACCGACCGCTATCCT
AAATATATCGTGTGTATATATAATATTTGATACGCGCGCACGCATTATGT
ACACGACGTAGCGAATGTAGGCGTGAGCGATCTGTACATGCATCGGTGTC
GTCGCGGCGCGCGGCGTTTGCCTCTATTGAGATTAGTCACGTCTATGCGC
TGCAGGTGTGTATATACAGTCATGTTAGATACGCATATCATATTATCCAT
ATCGGCATTACGTTANATCATGATCTATTTATAATGCGCGCAGTCGACTG
CGCGTACTAGTTACGTAGCAGACAGCGACAGAGTTCGCACGATGAATCTG
AAGTATTTGATGTGCCTAGTANCTTGCGATATTGAAGATNGAGAGCGCCG
CGCAAGCGAGACTTATCAATGTATGCATGCGTCGCATGACAAGTGTGATA
TGATATATATACATATCTAGCNCACTATCTATATNATCCGCCACGCGCTG
TGCGCTTATATGAACANTACAGCTCTGCGAGAGCACTTGTGATGTATCAC
ACAGAGATGATAACTCACAGTGCTCGGCGGTCGCGCGTGTANTACCGCCG
AGGGGTGTGCCGCGTGCGAACATGCGGCAGTATGGGAATGTCAGATTCGT
ATATATGTAGCGCATGATAGAGCGCTGTGTCAGANAGAAGACGTACAGTT
GCGTGCATGCTATACAGCAGTCCCCTGCGATATCTGTAATGCGTGAGAAT
GTAAATCTTGATGACAGTCATAACAATATGGGATTAGCGTGATACACAGA
TATGAGGCACGATGTGTGANTGTAACAGCACATGACTATAGACTGATAGT
AGACTCTCAGCCACACTCTATAGATATTGTGAAGTCTATTTATGTTGATA
TACACGACGACACACCGCGATATATATCTAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_a14.b1 MSMg01no471_a14.b1 CHROMAT_FILE:
MSMg01no471_a14.b1 PHD_FILE: MSMg01no471_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:08 2005
         (695 letters)



>mm_chr12_47816059_47817154
          Length = 1096

 Score = 1299 bits (672), Expect = 0.0
 Identities = 687/694 (98%), Gaps = 5/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacacttt---gctttaattttctcaacctcactaaatgacatgggatcatagg 61
           ||||||||||||     | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacact--aaaggtttaattttctcaacctcactaaatgacatgggatcatagg 262

                                                                       
Query: 62  aggggtcacatacatttaaacatctgttctgtataaaccttgggccaacactcaagttca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggggtcacatacatttaaacatctgttctgtataaaccttgggccaacactcaagttca 322

                                                                       
Query: 122 tgaataaatagatgttaaatctagagtccctttctcccattataagtttactccatacta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaataaatagatgttaaatctagagtccctttctcccattataagtttactccatacta 382

                                                                       
Query: 182 aaaccagatcctgaatgtccatgttcattaagagagaatgaatctgaagtactggataat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaccagatcctgaatgtccatgttcattaagagagaatgaatctgaagtactggataat 442

                                                                       
Query: 242 atcttgttgagatacaaatcctcatgaggtgtttaactagggcaaagaggcagatgtaac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcttgttgagatacaaatcctcatgaggtgtttaactagggcaaagaggcagatgtaac 502

                                                                       
Query: 302 agcagcaatatgaggctcatattctgtaataacttagattcagatgatctgtcaaaattt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcagcaatatgaggctcatattctgtaataacttagattcagatgatctgtcaaaattt 562

                                                                       
Query: 362 tattgctattctttaggattttcatatattcttaatatctattaataattgatgcaactc 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 563 tattgctattctttaggattttcatatattcttaatatctattaataattgatgtaactc 622

                                                                       
Query: 422 atattcatcaaaattgtccttaataatttggttgcttttcctttcttctatgaatgaaat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atattcatcaaaattgtccttaataatttggttgcttttcctttcttctatgaatgaaat 682

                                                                       
Query: 482 aaataatttaaaactctgaattatatttctgtgctttaaatatcttgaggttttatcatt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaataatttaaaactctgaattatatttctgtgctttaaatatcttgaggttttatcatt 742

                                                                       
Query: 542 aagcatgatgattaaataagttacgttttagtagtttacgtaggtgagaattaatcaaac 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aagcatgatgattaaataagttacgttttagtagtttacgtaggtgagaattaatcaaac 802

                                                                       
Query: 602 atgtactaccaaggataagctatggcagcgtcactccaaagacttagtgtattttctagg 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atgtactaccaaggataagctatggcagcgtcactccaaagacttagtgtattttctagg 862

                                             
Query: 662 gtaaaatattggatgtactaatgacagaaaatgt 695
           ||||||||||||||||||||||||||||||||||
Sbjct: 863 gtaaaatattggatgtactaatgacagaaaatgt 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1096
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1086
Effective search space:   743910
Effective search space used:   743910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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