Query= MSMg01no471_g17.b1 MSMg01no471_g17.b1 CHROMAT_FILE:
MSMg01no471_g17.b1 PHD_FILE: MSMg01no471_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:39 2005
(353 letters)
>mm_chr12_118553462_118554215
Length = 754
Score = 569 bits (294), Expect = e-166
Identities = 336/352 (95%), Gaps = 7/352 (1%)
Strand = Plus / Plus
Query: 4 ggaattcgtcctttc-ctgaga-cgttgagtggaggtttgaagggccagatctcacatgg 61
||||||| ||||| | |||||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 204 ggaattcatccttccactgagaccattgagtggaggcttgaagggccagatctcacatgg 263
Query: 62 ccacagctgagaaccactggggcttgccctgggcctgctcagtattcatgaaataacaca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacagctgagaaccactggggcttgccctgggcctgctcagtattcatgaaataacaca 323
Query: 122 gttcctcacggctccttggaggctctgaaagcaaaaggactttgtccttggatttagagt 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 gttcctcacggctccttggaggctctgaaagcaaaaggactttgtccttggatttaaagt 383
Query: 182 gagcagggaagtcatgggtacaatacagggctgtgaggtagcttcagctaaggcacttgg 241
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 gagcagggaagtcctgggtacaatacagggctgtgaggtagcttcagctaaggcacttcg 443
Query: 242 ggaggaggaagaggggatgcaatgaggagtaatcttt--gcttcctcctcatccccagtg 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 ggaggaggaagaggggatgcaatgaggagtaatc---cagcttcctcctcatccccagtg 500
Query: 300 ggggatgtcaggtgagtgcaggtagtgtgtgaagctgcagccctacccacac 351
||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gggaatgtcaggtgagtgcaggtagtgtgtgaagctgcagctctacccacac 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 754
Length adjustment: 9
Effective length of query: 344
Effective length of database: 745
Effective search space: 256280
Effective search space used: 256280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_g17.g1 MSMg01no471_g17.g1 CHROMAT_FILE:
MSMg01no471_g17.g1 PHD_FILE: MSMg01no471_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:40 2005
(616 letters)
>mm_chr12_118688425_118689440
Length = 1016
Score = 1145 bits (592), Expect = 0.0
Identities = 610/616 (99%)
Strand = Plus / Minus
Query: 1 tgtgttcctgaccctcatcctcaggcgactttttctgggtaaatgtcctcaattatgttt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 702 tgtgttcctgaccctcatcctcaggcgacttttcctgggtaaatgtcctcaattatgttt 643
Query: 61 tttgaatgaataaataaagatgaagggatgaacaaacagaaagaaagtaatggtgccaag 120
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 642 tttgaatgaataaataaagatgaaggggtgaacaaacagaaagaaagtaatagtgccaag 583
Query: 121 tccaaccatgcgggtggaaaggtggcagcagagaaagtggctcccaaacccttctttcct 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 582 tccaaccatgcgggtggaaaggtggcagcagagaaagttgctcccaaacccttctttcct 523
Query: 181 gccccagaggtgatagactctgagttggaaccaggatttcctagggacaagtgacctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gccccagaggtgatagactctgagttggaaccaggatttcctagggacaagtgacctaag 463
Query: 241 caagcaggcttgtttacacagcacacagctgccaattcaaggaggcaagaaaacaaaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caagcaggcttgtttacacagcacacagctgccaattcaaggaggcaagaaaacaaaggt 403
Query: 301 gctttccacaccctgctgataaggaggcttccctggggctgtttactctctcagaggata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gctttccacaccctgctgataaggaggcttccctggggctgtttactctctcagaggata 343
Query: 361 ggatgctgcccctgaagaggcctggatgctaacagaaggccctgcagttcagggaggtgg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggatgctgcccctgcagaggcctggatgctaacagaaggccctgcagttcagggaggtgg 283
Query: 421 ctagagcagcagcctggaggctcccacccagtaactacagtgggagtagagggctgtagt 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctagggcagcagcctggaggctcccacccagtaactacagtgggagtagagggctgtagt 223
Query: 481 gcctgaggtcaactgtacctagtgctaggtctcaggagctggggacaaatgactgagatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gcctgaggtcaactgtacctagtgctaggtctcaggagctggggacaaatgactgagatt 163
Query: 541 tctattaacataccaaacacgatggccagctcttccagcatgtctcactacctgtagccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tctattaacataccaaacacgatggccagctcttccagcatgtctcactacctgtagccc 103
Query: 601 ctccaagctcttccaa 616
||||||||||||||||
Sbjct: 102 ctccaagctcttccaa 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
