Query= MSMg01no471_h12.b1 MSMg01no471_h12.b1 CHROMAT_FILE:
MSMg01no471_h12.b1 PHD_FILE: MSMg01no471_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
(569 letters)
>mm_chr12_62626243_62627211
Length = 969
Score = 1011 bits (523), Expect = 0.0
Identities = 557/574 (97%), Gaps = 10/574 (1%)
Strand = Plus / Plus
Query: 2 agtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-- 257
Query: 62 ttttgagactangtgtttaactgccaggctttgatttgaggtggcataatatatacatga 121
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 --ttgagactaggtgtttaactgccaggctttgatttgaggtggcataatatatacatga 315
Query: 122 aaagaggtcgtttttatatgtctaggagaaggaggccaaaaaccaatagccaccacccag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaagaggtcgtttttatatgtctaggagaaggaggccaaaaaccaatagccaccacccag 375
Query: 182 cccagccatagccccagccccagct------ccagccccagccccagccccagccccagt 235
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 cccagccctagccccagccccagctccagccccagccccagccccagccccagccccagt 435
Query: 236 gacaacatcagccctgttcccacctgctttatctcagagacgggcagaggtttgtgcccc 295
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gacaacatcagccctggccccacctgctttatctcagagacgggcagaggtttgtgcccc 495
Query: 296 agtgtttgtttttgtttgtacaataggtattttgaaaattccatctagtgctttgattta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtgtttgtttttgtttgtacaataggtattttgaaaattccatctagtgctttgattta 555
Query: 356 aaagcaggttggatttaagactgcctaattaacatactatatctgatatgcgaaaatgga 415
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 556 aaagcaggttggatttaagactgcctaattaacatactagatctgatatgtgaaaatgga 615
Query: 416 gattcccttcacttgaagagactgaacaaatttagttaacttccgaagcgccttattctt 475
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gattcccttcacttgaagaggctgaacaaatttagttaacttccgaagcgccttattctt 675
Query: 476 gtaccttgtacattctaccttcttcccccaccattgcttgttccctacagaaaattccac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtaccttgtacattctaccttcttcccccaccattgcttgttccctacagaaaattccac 735
Query: 536 ttccttcttgagggcgcttgaattaacaacataa 569
||||||||||||||||||||||||||||||||||
Sbjct: 736 ttccttcttgagggcgcttgaattaacaacataa 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_h12.g1 MSMg01no471_h12.g1 CHROMAT_FILE:
MSMg01no471_h12.g1 PHD_FILE: MSMg01no471_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
(644 letters)
>mm_chr12_62636156_62637199
Length = 1044
Score = 1212 bits (627), Expect = 0.0
Identities = 639/643 (99%)
Strand = Plus / Minus
Query: 1 attatttttcttccaactatataaggtaggtatcagtattggtcccattctacagatgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 823 attatttttcttccaactatataaggtaggtaacagtattggtcccattctacagatgaa 764
Query: 61 gaacctaatccatataatgttacaaaatcaatttttttaaatactgacataggaaataca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 763 gaacctaatccatataatgttacaaaatcaatttttttaaatactgacatagaaaataca 704
Query: 121 tcggatatatactttactattttagaattcactactagcagaaataacaaatagctaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcggatatatactttactattttagaattcactactagcagaaataacaaatagctaatt 644
Query: 181 taacataattttatctaatattaaaattaaaaaccacagtgagaaataataaagactata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 taacataattttatctaatattaaaattaaaaaccacagtgagaaataataaagactata 584
Query: 241 attaaacatttcatattcactataataaaaaaccttcaaaatattaaaacaatcattgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 attaaacatttcatattcactataataaaaaaccttcaaaatattaaaacaatcattgaa 524
Query: 301 agaaatagcattcacatgaaatgtaatttcggtcatttctttacaaacataccattttta 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 523 agaaatagcattcacatgaaatgtaattttggtcatttctttacaaacataccattttta 464
Query: 361 ccaagaggaaaagaaaaaaaacaagatccatgacaatactaattttaattgtgttttata 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 463 ccaagaggaaaagaaaaaaaacaagatccatgacaatactaattttaattatgttttata 404
Query: 421 aataaattttagtaattataaaataatgtatatggacttctctatgacctaaacttcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aataaattttagtaattataaaataatgtatatggacttctctatgacctaaacttcttc 344
Query: 481 cttattatacctataaattattagatttgcagatagattagtttgatatgttattaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cttattatacctataaattattagatttgcagatagattagtttgatatgttattaaaac 284
Query: 541 attattaaataactttacataataataatagagtgaaattccagcataaattgcccaatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attattaaataactttacataataataatagagtgaaattccagcataaattgcccaatc 224
Query: 601 taaatttagtttactgaagaaatggttagtaaacatgaattac 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 taaatttagtttactgaagaaatggttagtaaacatgaattac 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
