Query= MSMg01no472_j18.b1 MSMg01no472_j18.b1 CHROMAT_FILE:
MSMg01no472_j18.b1 PHD_FILE: MSMg01no472_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:18 2005
(545 letters)
>mm_chr12_83212556_83213502
Length = 947
Score = 975 bits (504), Expect = 0.0
Identities = 534/544 (98%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgatcttcct-tcttcttcctccagcctattgggattacagttttaggctgtg 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattcttgatctt-ctctcttcttcctccagcctattgggattacagttttaggctgtg 807
Query: 64 ctggaggatgggtcaaatgtactaagcaaacactaccaactgagccatatccccagctct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ctggaggatgggtcaaatgtactaagcaaacactaccaactgagccatatccccagctct 747
Query: 124 cagtcatgcctttaatctggaacagcaatgtactaggctattatcatccaggacttgagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagtcatgcctttaatctggaacagcaatgtactaggctattatcatccaggacttgagc 687
Query: 184 ctgtgatagcagtctaggaggttcacaagtcatgaactttaggagccatcaggtactcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctgtgatagcagtctaggaggttcacaagtcatgaactttaggagccatcaggtactcag 627
Query: 244 gaatgatcactgtggttaagaacacctggctgatcctcctcacacctcagcacagctttg 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 626 gaatgatcactgtggttaagaacacctggctgaccctcctcacacctcagcacagctttg 567
Query: 304 ataccattttcgaatctaagaagggaaa-cccaaggtctttatggaggttacctgttcca 362
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 566 ataccattttcgaatctaagaagggaaaacccaaggtctttatggaagttacctgttcca 507
Query: 363 tctatgtttgtgggctcagtattggcttataagatagcaagaaaaacatattggttatca 422
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctatgtttgtgggctcagtatcagcttataagatagcaagaaaaacatattggttatca 447
Query: 423 atatttggaagaacctatttttatagatgagaatgtgcacttaaccttagggt-tgccct 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 446 atatttggaagaacctatttttatagatgagaatgtgcacttaacctcagggtctgccct 387
Query: 482 ttgggttgtatactcagtgagatttgacacatatctgataccttgtatctaccattagga 541
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgggttatatactcagtgagatttgacacatatctgataccttgtatctaccattagga 327
Query: 542 cttc 545
||||
Sbjct: 326 cttc 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 947
Length adjustment: 10
Effective length of query: 535
Effective length of database: 937
Effective search space: 501295
Effective search space used: 501295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_j18.g1 MSMg01no472_j18.g1 CHROMAT_FILE:
MSMg01no472_j18.g1 PHD_FILE: MSMg01no472_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:18 2005
(494 letters)
>mm_chr12_83021142_83022035
Length = 894
Score = 940 bits (486), Expect = 0.0
Identities = 492/494 (99%)
Strand = Plus / Plus
Query: 1 cagactcatcagcactatttcaaaggtcatagtgtggaaatgttctttctgttattggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactcatcagcactatttcaaaggtcatagtgtggaaatgttctttctgttattggca 260
Query: 61 aggttctgacaaaaatcaacttatagtgggaatgtaaagaaattatttttagtgctgaag 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aggttctgacaaaaatcaacttatagtgtgaatgtaaagaaattatttttagtgctgaag 320
Query: 121 gagctatcaaagtagtcttctaacctatatgttagaaatgaattgcatctgaagtagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctatcaaagtagtcttctaacctatatgttagaaatgaattgcatctgaagtagttg 380
Query: 181 ttaccacttggtagctgtgtagtaactaaattcctaggagtttttgacctggatttcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaccacttggtagctgtgtagtaactaaattcctaggagtttttgacctggatttcatt 440
Query: 241 ctgtattttctgacagatctgaaagactataaaggcttctcagagatactgtgtcctgtg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctgtattttctgacagatctgaaagactgtaaaggcttctcagagatactgtgtcctgtg 500
Query: 301 tttctgtgtatggtatcaaggaatccattaggttttaaaagatagcttaattctttaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctgtgtatggtatcaaggaatccattaggttttaaaagatagcttaattctttaagt 560
Query: 361 tagccaaatacattttgagactgaacatgctaaggtctgtgtcctaagtattgtgaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagccaaatacattttgagactgaacatgctaaggtctgtgtcctaagtattgtgaaata 620
Query: 421 aatattattgccaaactgtgagtgttgtgtctgtgtaggccatgctgtggtgagtctgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatattattgccaaactgtgagtgttgtgtctgtgtaggccatgctgtggtgagtctgtc 680
Query: 481 tgcgcacatttgtg 494
||||||||||||||
Sbjct: 681 tgcgcacatttgtg 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
