BAC Information

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BAC

Clone NameMSMg01-472K21
Chromosome12 (Build37)
Map Location 101,440,072 - 101,440,454
singlet/doubletsinglet
Overlap geneCalm1
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230
Downstream geneTtc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472K21.T7 (MSMg01no472_k21.b1)MSMg01-472K21.TJ (MSMg01no472_k21.g1)
ACCAG555156AG555157
length747838
length of high quality
(start - end)
383 (76 - 458)39 (71 - 109)
definitionCHROMAT_FILE: MSMg01no472_k21.b1 PHD_FILE: MSMg01no472_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:24 2005CHROMAT_FILE: MSMg01no472_k21.g1 PHD_FILE: MSMg01no472_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTAGTACTGCCATTTAGTCGCAGTTACTTCAATAAAGGAAA
ACTGTTCAAGCTAGCTTAACAATAAAGGGTGACAAAGAAGTGACAGCCTC
TGCTGGCTTCATTTCTTTGGCCTGCGGCTTGCTTGGCTTGCTTGGCCTGC
GGCTTGCGCTAAGCACTGCAAAGAAACCAGTCAGTCGCATGTGGGAAATG
GCGCCTCTAGTGGTTAAAGTACCCTCAGCAGCAGCTGCAGCAGCAGGCAG
AGAAGGAAGAGCGCCACCTACTGCGCCATAAACACTGCGGTTGCTGATTT
CATCCAAGAGACCCAGCCCAATGCCGCGGACAAGAAGGCAGCCAGGACCA
GGATCCTGTCCAGGGGCAGGCTTTTTAGTGCACCTTGCGCATAGCTTTGG
GCCCTCCAAAATCTCCACACTGGCGTTACATAATGGTATTGTGTTGGATT
AACAGGCCTTTATACCCACTTTATGAGAAACAATTATGACACAAAAATAC
CGTATTGGGTAACCAACCCCGCTTTCTTTCCGTAAAAAAAAAGCTTTCCT
CACACTTAAAATAAGACCGAATCTTCTTAAACACCACCCTTTAAATGGTG
TATACACTCCCTTCCCAAATATATCTTTTTCCTTATCTTCCATAAAAAGT
TCCTCACCCATTTTTCCACCCCCCATTTCTAACAATTCCCTTCTCTT
TCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAGATTCTGTGGGTTTGGTTTTTTTTGTTTGTT
TGTTTGATTTTTCCATATTGACCGCAACACGCGCACCAATACATCCCTGC
TTTCACATTGCTTACCCCCCCGGTGGGACCTCGTCTATGACCTCACACCC
CCATCCCCTAACAACCATACTTAAACTAAATACGTCTCCACTTGTCCCTT
ACTTTTTTTTCTCGTCCGGTCAACTCCTTCATCCTTCATTCCCCCTCAAA
CCCGTAACCATCACATTATTTTTTTTTTTTTCTACGCTTTCCCATAAACC
CAGTTACCTTATTTTTTCCCTCTCACTTCACCTTTACTTGGACTCTCCAC
CTTCTTTTTCTCACTTCTTCAACTTTTCCCTTCCCATGTACATATCAACC
TTCTTCCATTCTTTCCATTCCTAATTAATATTCCTTTTTCCCACTCTTCA
CCCCTATTTTTTTTCATTCCTACCCCCATTTCATTTTTCCTTCTTCCCTA
TCTCTTCTCTATCTCCCTTTTACCACTCTTTCGTATCCTGTCTTATTCTC
CTACCTCGTTTATCCACTCACCCTACTATTATTTTACCTTTCCCTCTTCT
TGTCTCAACTTCTACCCCCTCCATTTATTATTTTAACCCTAATATCGCCC
AATATTTATATTTTCTCCTCTCTCCTTCCCCACCCCCCCTCCCTTCTTTC
CCCCCACTTAATTTTATATTTCTAACTACACCCTATAACCCCCCTGTTCC
CACCCCCTCATCCCCTTCCCATTCTTCATCTTCCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_k21.b1 MSMg01no472_k21.b1 CHROMAT_FILE:
MSMg01no472_k21.b1 PHD_FILE: MSMg01no472_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:24 2005
         (383 letters)



>mm_chr12_101439872_101440654
          Length = 783

 Score =  733 bits (379), Expect = 0.0
 Identities = 382/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcgcagttacttcaataaaggaaaactgttcaagctagcttaacaataaagggtgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtcgcagttacttcaataaaggaaaactgttcaagctagcttaacaataaagggtgacaa 524

                                                                       
Query: 61  agaagtgacagcctctgctggcttcatttctttggcctgcggcttgcttggcttgcttgg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cgaagtgacagcctctgctggcttcatttctttggcctgcggcttgcttggcttgcttgg 464

                                                                       
Query: 121 cctgcggcttgcgctaagcactgcaaagaaaccagtcagtcgcatgtgggaaatggcgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cctgcggcttgcgctaagcactgcaaagaaaccagtcagtcgcatgtgggaaatggcgcc 404

                                                                       
Query: 181 tctagtggttaaagtaccctcagcagcagctgcagcagcaggcagagaaggaagagcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tctagtggttaaagtaccctcagcagcagctgcagcagcaggcagagaaggaagagcgcc 344

                                                                       
Query: 241 acctactgcgccataaacactgcggttgctgatttcatccaagagacccagcccaatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 acctactgcgccataaacactgcggttgctgatttcatccaagagacccagcccaatgcc 284

                                                                       
Query: 301 gcggacaagaaggcagccaggaccaggatcctgtccaggggcaggctttttagtgcacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcggacaagaaggcagccaggaccaggatcctgtccaggggcaggctttttagtgcacct 224

                                  
Query: 361 tgcgcatagctttgggccctcca 383
           |||||||||||||||||||||||
Sbjct: 223 tgcgcatagctttgggccctcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)